Ruegeria sp. THAF33: FIU92_20725
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Entry
FIU92_20725 CDS
T06269
Name
(GenBank) putative DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rut
Ruegeria sp. THAF33
Pathway
rut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU92_20725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rut03019
]
FIU92_20725
03009 Ribosome biogenesis [BR:
rut03009
]
FIU92_20725
Enzymes [BR:
rut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIU92_20725
Messenger RNA biogenesis [BR:
rut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIU92_20725
Ribosome biogenesis [BR:
rut03009
]
Prokaryotic type
rRNA helicases
FIU92_20725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QFT75479
LinkDB
All DBs
Position
pTHAF33_a:complement(749488..751365)
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AA seq
625 aa
AA seq
DB search
MLVSAQTGSGKTIGFGLAIAHRVLGDEETLGKPEAPLALVVAPTRELALQVKRELGWLYS
GAGAFLASCVGGMDIRDERRALARGAHIVVATPGRLRDHINRGSIDLTAIRAVVLDEADE
MLDLGFREDLEFILDETPADRQTLLFSATVPRAIANLAKRYQRDAERVSTVGEQTQHADI
EYRAMTVAPRDGENAIINVLRYYEAPNAIVFCNTRAMVSRLTARLSNRGFSVVALSGELT
QSERSNALQAMRDGRARVCVATDVAARGIDLPNLDLVVHAELPNSHETLLHRSGRTGRAG
RKGVSALIVAPSSRKKAERILKFAKLTAEWGSAPSADEVNERDQARMLASEDWQVEVTES
ERPSVEKLIARFTPEQIAAAYLRQYKLRHSAPEELSAVDQNAPKPRASFGPGVWFSLSEG
HNQNASPRHMLPMICKAGGLTKDDIGAIRIAEDVTYFEISEASVDRFLTAIGPEMKIEET
KDLVRLDKAPDLSSTGRSGLKRKFKGRPTGHKKENSPAERKAHRRQSKPEVQPAQTVPAT
ETRRASDDDAKSQFSASGAKPKKRKPGSVEQRRGRSKPAGDAPKGPPPPKGKPNSKKNRA
RAAAVKSAKGGNAVPKRRKSGPKGS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgtcggcccagaccggatcagggaagaccattgggtttggtctggcgatagcg
cacagggtgctgggcgatgaagaaacgctcggcaaacccgaagcaccgttggcgctggtt
gtcgcaccgacccgcgagctggcacttcaggtgaaacgggaactcggctggttgtattcc
ggagcgggagcgtttctggcctcgtgcgtcgggggcatggacattcgggatgaacgtcgc
gcgttggcccgaggcgcccatatcgttgtggccactccgggacgacttcgcgaccatatc
aatcgagggtcaatcgatctgacagctatccgagcagttgtcctggacgaagcggatgaa
atgctggatctggggttccgcgaggatcttgagttcatccttgatgaaacacccgcggat
cgtcagaccttgttgttttctgccactgtgccacgcgcaattgccaatctggccaagcgg
taccagcgcgacgcggaacgtgtgagcacggtcggcgaacagacccagcatgcggatatc
gagtatcgggccatgacggtggcgccgcgtgatggtgaaaacgcgataatcaatgtgctg
cgatattacgaggcccccaatgccatcgttttctgcaacacccgagcaatggtttcgcgc
ctgaccgcgcgcctgtcgaaccgggggttttctgtcgtggccctgtcaggtgagctgacc
cagagcgaacgatccaacgcgttgcaggccatgcgcgatggacgggcccgggtctgtgtc
gcaaccgatgttgcggcccgcggcatcgatctgcccaaccttgatctggtggtccatgcc
gaactgcccaacagccatgaaacactgctgcaccggtctggccgcacgggtcgcgctggg
cgcaagggcgtcagtgccctgatcgtcgcgccatcatcgcgcaaaaaggcagagcgcatt
ctgaaatttgccaagctgacagcggaatggggatcggccccgtctgccgatgaggtgaac
gagcgtgatcaggctcggatgctggcatcagaggactggcaggtcgaggtcacggaaagc
gaacgcccgtctgttgaaaaactgattgctcgcttcacgcccgaacaaattgcagccgct
tacctgaggcaatacaaactgcgccattccgccccggaagagctgtcggcggtcgatcag
aacgccccaaagccacgcgcatcttttgggccaggcgtctggttttcattgtccgaaggg
cacaatcagaatgcgtccccccgtcatatgctgccgatgatctgtaaggcgggtggtctg
acaaaagacgacatcggtgccatccggattgccgaggacgtaacttatttcgaaatcagt
gaagccagtgtcgaccgctttctgaccgccattggtccagagatgaaaatcgaagaaacc
aaagaccttgtgcggttggacaaagcaccggacctgtcgtcaaccggtcggtccggtctc
aaaagaaagttcaaaggcagacctacgggacacaaaaaggaaaactctccggctgagcgg
aaagcccaccgccgccaatccaagcccgaggttcagcctgcccagaccgtgcccgcgacc
gaaacccgccgagcgtcggatgacgacgcaaaaagccagttcagcgcttcgggcgcaaaa
ccgaaaaagcgcaagcccggcagtgtcgagcaaaggagaggtcgctccaaaccagccgga
gacgcgccgaaaggtccgccgccgccaaagggcaagccaaacagcaagaagaatcgagca
cgcgcggcggccgtcaaatccgccaagggtggcaacgcagttccaaaacgtcgcaaatcc
ggacccaagggcagttga
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