Rahnella victoriana: J9880_06150
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Entry
J9880_06150 CDS
T07871
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rvc
Rahnella victoriana
Pathway
rvc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J9880_06150 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvc03021
]
J9880_06150 (rpoB)
03400 DNA repair and recombination proteins [BR:
rvc03400
]
J9880_06150 (rpoB)
Enzymes [BR:
rvc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J9880_06150 (rpoB)
Transcription machinery [BR:
rvc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J9880_06150 (rpoB)
DNA repair and recombination proteins [BR:
rvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J9880_06150 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
UHM91929
LinkDB
All DBs
Position
complement(1328423..1332451)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKVTYQIRDNKLQME
LVPERLRGETASFDIEADGKVYVEKGRRITARHIRQLEKDEIQRIEVPVEYIAGKVVSKD
YIDTNTGELIVPANMELSLDLLAKLSQSGHKTIETLFTNDLDHGAYMSETIRVDPTSDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIQVMKKLIGIRNGQGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGLVT
DEINYLSAIEEGNFVIAQANSNLDEEGRFIEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGIVQYVDASRIVIRVNEEEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIQSALVAGGVEADKLGKLPRDRWLELSLTDEDKQNQLEQLAEQYDE
LKSEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVSK
LREFIQRAYDLGDDVCQKVDLTTFTDDEVLRLAENLKKGMPIATPVFDGAKESEIKQLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggtaaacgtccacaa
gttctggacattccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccggaaggccagtacggtctggaagctgcattccgttctgtattccctatcaag
agctacagcggtaactctgagctgcaatacgttagctaccgtcttggtgagcctgtattc
gacgttaaagaatgccagatccgtggtgtgacgttctccgcgccactgcgcgtgaaactg
cgtctggtaatctacgagcgcgaagcaccagaaggtacggtcaaagacatcaaggaacaa
gaagtctatatgggcgaaattccgctcatgaccgaaaatggtacctttgtgattaacggt
actgagagggttatcgtatctcagctgcaccgtagtccgggcgtattcttcgacagcgat
aagggtaaaacccactcctcgggtaaagtgctttataacgcacgtatcatcccttaccgc
ggttcatggttggatttcgagtttgacccgaaagacaacctgtttgtacgtattgaccgt
cgccgtaaattgcctgcgaccatcattctgcgtgcattaaattacacgactgaacagatc
cttgacctgttctttgacaaggtgacttaccagatccgcgacaacaagttgcagatggaa
ctggtacctgagcgcctgcgcggtgaaacagcttcctttgatattgaagctgacggcaaa
gtctatgtagaaaaaggccgccgcatcactgcccgtcatattcgtcagcttgaaaaagac
gagattcagcgcatcgaagttcctgttgagtacatcgcagggaaagtggtctctaaagac
tacatcgacaccaataccggtgagctgatcgtcccggctaacatggaattgtctctggat
ctgctggcgaaactgagccagtccggtcacaaaaccattgaaacgctgttcaccaacgac
ctcgatcatggcgcgtacatgtccgagaccattcgcgtcgacccaaccagcgatcgcctg
agcgcactggttgagatctaccgaatgatgcgtcctggtgagccaccaacgcgtgaagcg
gctgaaagcctgttcgagaacctgttcttctctgaagatcgttacgacctctctgctgta
ggtcgtatgaagttcaaccgttctctgctgcgtgatgaaatcgaaggttcaggtatcctg
agcaaagacgacatcattcaggtgatgaaaaagctgatcggcattcgtaacggccagggc
gaagtggatgatatcgaccacttgggcaaccgtcgtattcgttccgttggcgaaatggct
gaaaaccaattccgtgttggtctggttcgtgttgagcgtgcggttaaagagcgtctctct
ctgggcgacctcgacacattgatgcctcaggatatgatcaacgctaagccgatttcggct
gcggtgaaagaattcttcggttcaagccagctgtcacaatttatggaccagaacaacccg
ttgtctgagattacgcacaaacgtcgtatctctgcattgggcccgggcggtttgacccgt
gaacgtgctggctttgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgccagaaggtccaaacatcggtctgatcaactccttgtctgtctatgcacag
accaatgagtacggtttcctggaaaccccataccgtcgcgtacgtgatggtctggtgact
gatgaaatcaactatctgtctgccattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggacgaagaagggcgcttcattgaagacctggtcacttgtcgtagcaaaggc
gaatcaagcctgtttagccgcgatcaggttgactacatggacgtttccacccagcaagtt
gtatccgttggtgcttcactgattccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcagttccgactctgcgcgctgataagccgctggtt
ggtactggtatggaacgtgctgtagcggttgactccggtgttactgccgtagccaaacgt
ggcggtattgttcagtacgtggatgcatcccgtatcgttattcgtgttaacgaagaagag
atgtacccgggcgaagcaggtatcgacatttataacctgaccaaatacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtgaatctgggcgaacctatcgagcgcggc
gacgtgctggcagatggtccgtcaacagatctgggcgaactggctctgggtcagaacatg
cgtgtcgcgttcatgccttggaacggttacaacttcgaagactccatcttggtctccgaa
cgtgttgtgcaggaagaccgcttcaccaccatccatatccaggaactggcatgtgtgtcc
cgtgacaccaagttagggcctgaagagatcaccgctgacatccctaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttatatcggtgctgaagtgaccggtggt
gacattctggttggtaaggtaacgcctaaaggtgaaacccagctgacgccagaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgatgttaaagactcttctctgcgtgta
ccaaacggcgtttccggtacggttatcgacgtgcaagtcttcacccgcgatggcgtggaa
aaagacaagcgtgcgttggaaatcgaagaaatgcagctgaagcaggctaagaaagacctg
actgaagagctgcagatcctggaagccggtctgtttgcacgtatccagtctgcgctggtt
gctggcggtgttgaagctgacaagctgggcaaattgcctcgcgatcgttggttagaactg
tcactgactgacgaagacaaacagaatcagttggaacagcttgctgaacagtacgacgaa
ctgaaatccgagtttgagaaaaaactcgaagctaagcgtcgtaaaatcactcagggcgat
gatctggcaccaggcgtgctgaaaatcgttaaagtgtatttggccgttaaacgtcaaatc
cagcctggtgacaagatggcaggccgccacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggaacacctgttgatatcgtactgaacccg
ctgggcgttccatcacgtatgaacattggtcagattttggaaacccacctgggtatggcc
gcgaaaggtattggtgaaaaaatcaatgccatgctgaagaaacaggaagaagtttctaag
ctgcgtgagttcatccagcgtgcctatgatctgggcgacgacgtttgtcagaaagttgat
ctgaccaccttcaccgatgacgaagtattgcgtctggctgagaacctgaaaaaaggtatg
ccaatcgcaacaccagtcttcgacggtgcgaaagagtcagagatcaagcaactgcttgaa
atgggtggaatccctacctctggtcagatcacactgtttgacggccgtaccggcgagcaa
ttcgagcgtcaggttaccgtcggctacatgtacatgctgaaactgaaccaccttgttgac
gataagatgcacgcgcgttctaccggttcttacagccttgttactcagcagccgctgggt
ggtaaagctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcactggaagca
tacggtgccgcgtataccctgcaggaaatgctgactgttaagtccgatgacgtgaacggc
cgtactaagatgtataaaaacatcgtagatggcgatcatcgtatggaaccaggcatgccg
gagtccttcaacgtactgttgaaagaaatccgttctctgggtatcaacatcgagctggaa
gacgagtaa
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