Candidatus Rickettsiella viridis: RVIR1_11150
Help
Entry
RVIR1_11150 CDS
T05765
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rvi
Candidatus Rickettsiella viridis
Pathway
rvi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rvi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RVIR1_11150 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvi03021
]
RVIR1_11150 (rpoB)
03400 DNA repair and recombination proteins [BR:
rvi03400
]
RVIR1_11150 (rpoB)
Enzymes [BR:
rvi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RVIR1_11150 (rpoB)
Transcription machinery [BR:
rvi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RVIR1_11150 (rpoB)
DNA repair and recombination proteins [BR:
rvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RVIR1_11150 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
BSH_YknX
DUF7647
Motif
Other DBs
NCBI-ProteinID:
BBB15583
UniProt:
A0A2Z5UX37
LinkDB
All DBs
Position
complement(1170942..1175072)
Genome browser
AA seq
1376 aa
AA seq
DB search
MVIRISQATESAAKPYSFTEKKRIRKNFGKQATIMEAPYLLATQIESYHRFLQTDTPADA
LEEFGLNAAFKSVFPISSYSGGEATLEYISYRIGQPPFDVKECQARGLTYGAPLRVKMRL
IIFDEAAPGTNRIKNIKEQEVYMGELPLMTDTGSFVINGTDRVVVSQLHRSPGVFFEHDK
GKTHSSGKLLYAARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLAATILLRALGFTTEEIL
ELFFANNTFHFKGESVVLDLVPERLRGEIATFDIKDAAGKVIIEQGRRIAARQIRQLEQA
KIKQLEFTAEYLLGKTLAKPVIDPETGEILFEANTELTADIIKKIAESGIKTIETLYTND
LDSGAYVSTTLRIDPSNSQQEALVEIYRMMRPGEPPTKEAAEALFKNLFFVPDRYDLSAV
GRMKFNRRLGREEILGSGTLAKEDIVDVLKALIDIRNGKGDVDDIDHLGNRRVRSVGEMA
ENQFRVGLVRVERAVRDRLSVAESENLMPQDLINAKPISAAIKEFFGSSQLSQFMDQVNP
LSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYAR
TNHYGFLETPYRKVENGKVTHEIQYLSAIEEGKYVIAQANTRLDSHGRLIDDLIPSRHRN
ESMLTTADKVDYMDISPSQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRTEKPLV
GTGMERKVAVDSGVVVVAKRSGFIDSVDAGRIVVRVDDEEAVAGTAGVDIYNLTKYTRSN
QNTCINQRPLVNKGDKIKKGDVLADGPSTDLGELALGRNLLVAFMPWNGYNFEDSILISE
RVVSEDRFTTIHIEELTCIGRDTKLGSEEITSDIPNVGESALSKLDESGIVHLGAWVEGG
DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMRGTVIDVQVFTRDGLE
KDQRALSIEAAALEKIKKDLYDEFRILENDSYQRLETLLVGAVASSGPNKLKSGSKVTLE
YLNTLSKDQWFSVSLRDEAANQQLEAVAKQLEAARLALDEKFESKRKKLTQGDDLAPGIL
KIVKVYLAIKRCIQPGDKMAGRHGNKGVISTIIPVEDMPYMEDGTPVDIVLNPLGVPSRM
NVGQVLETHLGWAAKGLGLKIGGMLDNKKNMKEIKTFLGSIYNDNKQTAQKVDLDALSNE
ETLELAQNLRKGVTMATPVFDGVTETEIKRMLRLADLPESGQTTLYDGRTGQRFERPVTV
GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL
QEMLTVKSDDVAGRTKMYKNIVDGDHHMEAGMPESFNVLVKEIRSLAINAELETKD
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggtaattcggatatcccaagcaactgagtcagcggctaagccttattcattcacagaa
aaaaaacgtattcggaaaaattttggtaaacaagccacgattatggaggcgccttatctt
ttagcgacccagatcgagtcttaccatcgttttttgcaaacagataccccagcagacgct
ttagaagagtttgggttgaatgcggcttttaaatcagtgtttcctatttcttcttattct
ggtggtgaagcgaccttagaatatatcagctaccgaatagggcaaccgccttttgatgtc
aaagaatgtcaagcacgcggtctaacctacggtgcgcctttacgtgtcaagatgcgtttg
attatttttgatgaagcagcgccgggcactaaccgaattaaaaatattaaagaacaagaa
gtctacatgggtgaattgcccttgatgacggatacaggtagttttgttattaatggaact
gaccgtgtggttgtttcgcaactacatcgttcgccgggtgtatttttcgagcatgataag
ggtaaaacacactcatccggtaaattactttatgcagcacgcattattccttaccgtggt
tcatggctagattttgaatttgatcccaaagataacctctttgttcgtatcgacagacgc
cgtaaattagcggcaacgatcctattacgtgccttaggatttaccactgaagaaatactc
gaattatttttcgcgaataataccttccatttcaaaggtgagtcagttgttttagattta
gtacctgagcgcctacgcggtgaaatcgccacatttgatattaaggatgcagcaggtaaa
gttattatagaacaaggtcgccgtattgctgcgcgacaaattcgacagttagaacaagca
aaaataaaacaattagagtttacagctgaatatttgctgggtaaaaccttagcaaaacca
gtcattgacccagaaacaggtgagattttatttgaagcgaataccgaattaaccgctgat
atcattaaaaaaatagctgagtccggtataaaaaccattgaaacattgtataccaatgat
ttagattcaggcgcttatgtttccacgaccctgcgtattgatcctagcaatagccagcaa
gaagcattggtagaaatctaccgtatgatgcgtccgggtgagccgccaaccaaagaagca
gcagaagctttatttaaaaatctgttttttgttcctgatcgttatgatttatccgctgta
ggccgaatgaagtttaatcggcgtttagggcgtgaagaaattttaggatctggcacttta
gctaaagaagatattgttgatgttttaaaagccttgattgatattcgtaatggtaaaggc
gatgtcgatgatattgaccatttaggcaatcgacgtgtgcgtagtgtgggtgagatggct
gaaaaccagttccgtgttggcttagtgcgtgtggaacgagcagttagagatcgtctcagt
gtggcagagtctgaaaatttaatgccgcaagatttaattaacgctaaacctatttctgcg
gcgataaaagaattttttggttccagtcaattatctcagttcatggaccaagtaaatcca
ctttcagaaattacgcataaacgacgtgtttcagcgcttggaccgggtggtttaacccgt
gaacgtgcgggctttgaagttcgggacgtgcatccaacccattatggtcgtgtttgtccg
attgaaacaccggaaggacctaatattggcttgattaattctctggctgtttacgcacgc
acaaaccattatggattccttgaaaccccttatcgaaaagttgaaaacggtaaagtaacg
catgaaatccaatatttatcagctattgaagaaggtaaatatgttattgcgcaggctaat
acacgtttggatagccatggccgactcatcgatgatttgattccttcacgccatcgtaat
gaatccatgctgacaacagcagataaagtcgattatatggatatttcgccgtcgcaggtt
gtttccgtagcggcttctttaattccgttcttagaacacgacgatgcaaaccgtgcattg
atgggttctaatatgcaacgtcaggcggttcctaccttacgtactgaaaaacccttagtg
ggaacagggatggaacgtaaagtggcggtagactcgggtgttgttgttgtcgcaaaacgt
agtggttttattgattccgttgatgcaggtcgaattgttgtgcgtgtagacgacgaggaa
gcggtagcaggtaccgccggggttgatatctataacctgacaaaatatacacgttctaat
caaaatacctgtattaaccaacgacctttagtcaataaaggcgacaagattaagaaaggg
gatgtattagcggatggtccttctacggatctcggtgaattagcattagggcgcaattta
ttagtcgcatttatgccttggaatggatataacttcgaagattctattttaatttcagag
cgcgttgtttctgaagatcgttttaccacgattcacattgaagaactgacctgtattggt
cgtgataccaaattaggttctgaagaaattacgtctgatattcctaatgtcggtgaaagt
gcgctttctaaattagatgaatctgggattgtacacttaggggcttgggttgaaggtggt
gatattctggttggaaaagtgacaccaaaaggtgaaacacaattaacgccagaagaaaaa
ttattacgcgctatttttggtgaaaaggcctccgatgtaaaagatagttcattacgtgtg
ccttccggcatgcgaggaacagttatcgacgtgcaagtctttacacgtgatggtctggaa
aaagatcaacgtgctttaagtatcgaagctgcggctttagaaaaaattaagaaagattta
tacgacgaatttagaattttagaaaatgatagttaccaacgtttagaaacattattggtg
ggtgctgttgcgagcagtggtcctaataagctcaaatcaggtagcaaggtaacgctggaa
tacttgaatacgctgtctaaagatcagtggttttcggtcagcttgcgtgatgaagccgcc
aatcaacagttagaagctgttgctaagcaacttgaagcagctcgtttagctttagatgaa
aagtttgaaagtaaacgtaaaaaattaacccaaggcgatgatttagcaccagggatactc
aaaatcgttaaggtgtatttggctattaagcgttgtattcagccaggggataaaatggcg
ggtcgacatggtaacaaaggggttatttcaaccattatccccgtcgaagatatgccttat
atggaagatggtacgcccgtggatatcgtattgaatccattaggggttccatcgcgtatg
aacgtggggcaagtattagaaacccatttaggttgggcagccaagggcttaggtttaaag
ataggcggcatgttagataacaagaaaaacatgaaagaaatcaaaacctttttaggctcc
atctataacgataataagcaaaccgcgcaaaaggttgatctcgatgcgttatcgaatgaa
gaaacgctcgagttagcgcagaatttgcgtaaaggtgtgactatggcgacccctgttttt
gatggtgtgactgaaacggaaatcaagcgcatgttacgtttagcggatctacctgaatca
ggccaaacaacgctttatgatggtagaacgggtcagcgttttgaacgccctgttacagtt
ggttatatgtatatgctcaaactaaatcacttagttgacgataaaatgcatgcccgatca
acgggttcttatagtttagtcactcaacagccgttgggtggtaaagcacagtttggtgga
cagcgatttggtgaaatggaagtatgggctttagaggcctacggtgcagcttacacctta
caagaaatgttaacggtgaaatcagatgatgtcgctggtcgaacgaagatgtataaaaat
attgttgatggtgaccatcatatggaagcgggtatgccagaatcgtttaacgtattagtc
aaggaaatacgctccttggcaattaatgcagaattagaaaccaaagattaa
DBGET
integrated database retrieval system
