KEGG   Rhododendron vialii: 131298937
Entry
131298937         CDS       T09330                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like
  KO
K14004  protein transport protein SEC13
Organism
rvl  Rhododendron vialii
Pathway
rvl03013  Nucleocytoplasmic transport
rvl04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:rvl00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    131298937
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    131298937
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rvl03019]
    131298937
   04131 Membrane trafficking [BR:rvl04131]
    131298937
Messenger RNA biogenesis [BR:rvl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     131298937
Membrane trafficking [BR:rvl04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    131298937
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    131298937
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    131298937
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR3_2nd Beta-prop_WDR35_TULP_N Beta-prop_Vps41 WDR55 ANAPC4_WD40 WD40_Gbeta Beta-prop_IFT122_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd WD40_RFWD3 NBCH_WD40 Beta-prop_WDR41 Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_HPS5 Beta-prop_IFT140_1st WD40_2 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 131298937
NCBI-ProteinID: XP_058180425
LinkDB
Position
8a:6020907..6027172
AA seq 301 aa
MPAQKIESGHNDTVHDVSMDYYGKRLASASSDTTIKIIGVSNNLTSQHLTTLTGHQGPVW
QVAWAHPKFGSILASCSYDGRVIIWKEGNPNEWTQAHVFTEHKSSVNSIAWAPQELGLCL
ACGSSDGNISVFTARSDGGWDTTRIDQAHPLGVTSVSWAPSTAPGALVGSGMLDSVQKLA
SGGCDNTVKVWKLYNGNWKMDCFPALQMHTDWVRDVAWAPNLGLPKTTMASASQDGTVVI
WTVAKEGDQWEGKVLKDFKTPVWRASWSLTGNLLAVASGDNNVTLWKEAVDGEWQQVTTV
D
NT seq 906 nt   +upstreamnt  +downstreamnt
atgcctgcccagaagattgaaagcggtcacaatgacacagttcacgatgtgtccatggat
tactatggaaagcgtttagcaagcgcgtcatctgataccactataaaaataattggcgta
agcaacaacttgacatcacagcacctcacgactttaactggacatcaaggccctgtttgg
caggttgcttgggcacatcccaagtttggatcaatccttgcttcctgttcctacgatggt
agggtaattatttggaaggaaggtaacccaaatgaatggacacaggcccatgtgttcacc
gaacataaatcatccgtcaattcaattgcttgggcgcctcaagaacttggtctctgctta
gcttgtggatcttccgacgggaatatctcagttttcactgccagatccgatggtggttgg
gacaccaccaggatagaccaagcccaccctcttggagtgacctcggtttcttgggcccca
tctacggctcctggcgctctcgttggatctggcatgctggattctgttcagaagctggct
tctggtggctgtgataatactgtgaaggtttggaagctatataatgggaattggaagatg
gactgcttccctgccttgcaaatgcacactgattgggttagggatgtggcttgggctccc
aacctgggccttccaaagactactatggcaagtgcttcacaagatgggacagtggttata
tggactgtggccaaagaaggtgatcaatgggaaggtaaagtcttgaaggacttcaagact
ccagtttggagggcatcatggtctttgacaggaaacttgttggctgtggcttctggtgac
aacaatgtcactttgtggaaagaagcagttgatggggagtggcaacaggtgaccactgtt
gattaa

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