Rhododendron vialii: 131301673
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Entry
131301673 CDS
T09330
Name
(RefSeq) SNF2 domain-containing protein CLASSY 2-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
rvl
Rhododendron vialii
Pathway
rvl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131301673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131301673
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
131301673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
131301673
NCBI-ProteinID:
XP_058184035
LinkDB
All DBs
Position
9a:complement(37290176..37301133)
Genome browser
AA seq
1382 aa
AA seq
DB search
MRMRSIRESTHPFDACPFEAFYHGSWKTVECLQIRAGAKTTLLAGDGHVIKENVPITNLR
IRSRKATLSDCSCFLRPGLDVCVLSTCQLTGSSSKEENQEPVWLDAKIRSIERKPHESKC
ACIVYVSFYVPQGPLGVTKKKLRKDTVTVQTDQIFILQKLERNPYQNEHYRWCISEDCSS
LQECKLFPGKFSYDVSWFLVASVQKKIEVDVRSIQTKIVYQLVEDECDKHSPSSEARSKA
VNFKLQNGISVPFIVTFTLGKRIGCYLDKDEPSSLYELMGLRRSKRRCIQPELYLGGGDL
LDSDADVVWLGSCKTRRKECEGDGRVDSYRREFFSCQGKIKSRELKSMASNLKDHQPSLA
PHGKQKSQPSVAAVKDETDQMVCEEDSPDTRVPVNFSTGGYSKAREHQPPLAHQRKHKSQ
PSSSRVKEETVEIVSEEDSLDTHVSGNLSRGKRKHKPQPSSSRVNEETVEIVSEEDSLDT
HVPGNLSRGERKHKSQPSISPVKDETNGMVDNEDSFDTHITGEFSREDGEVGSRYMHMNG
TRNVHRTGTIELDFLDAEGAWKGKTSHKKYQRKRDYSSFSVRESFDNAGTYRRRNSRVSI
CGEMLKRCMENIKSSVNKEHPLAIDKWNEFRATNFLDRRNRDNAPSPDGEEEPEIQVLWK
QMELCRASTYLLQDDEGSNVAEVAQDTSIQCAYVCPHEYKLNEEIGIVCQLCGFVNTEIK
DVSPTFWRFPSWTPNKWSRDRENAEPNPDDNVGFSDLFRTPAASNTPLSEGDKNVWALIP
DLKRKLRLHQMRAFEFLWRHCAGSLVPILMDLTTQNRGGCVISHSPGAGKTMLIIAFLVS
YLKLFPGSRPLVLAPKTALYTWSKETIKWEVPVPVYQIHDGETYRGEVLRKKKGISLEHG
FPKPDRNALHLVDCMEKIQKWLDHPSILLMSYSYFMTLTREDSKDSHRRYLGQLLRQCPG
ILILDEGHNPRNNKSRLRKALMKVETRLRILLSGTLFQNNFGEYFNTLTLARPRFVDDVL
RKLDRNSGTTNKGGKTRTAIENKARRLFIVKIARKIDSSVGKERMRGLNLLRNLTSSFID
VYDGGNAVNLPGLQCYTLTMKSTPKQQKLLKKLLNQVAKYKGFPLEKEFLATLVSIHPWL
LKTTPASSQYFNKQELEGLEKYKFDLKLGSKVRFVMSLVPECIMRKEKVLIFCHNISPID
LFVNLFASSYGWRKGEEVLVLQGKMELFERGIAMDKFEQREGVAKVMLASITACCEGINL
IAASRVILLDPEWNPSKTKQAIARAFRPGQEKEVYVYQLLASGCMEEDKYNRTAWKERVS
SMILYSEGHVEEHSKQQTEKIEDDLLREIVEIDGANLFHKITQNEKSFKWVGGQSSCIST
PS
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgaggatgaggagtatacgtgaaagcacacatccttttgatgcatgcccgttcgaggcg
ttctaccatggttcgtggaaaactgttgaatgcttacaaattagggctggggctaaaacc
acgcttttagcaggagacggacatgtgattaaagaaaatgttcccatcacaaaccttcga
ataaggtcaagaaaagcaactttgtcagattgcagctgctttttaaggcctggacttgat
gtttgtgtgctttcaacctgtcaacttacaggaagttcaagcaaagaggaaaaccaggag
cctgtctggttagatgcaaaaatacgttctattgagaggaagccgcatgaatccaaatgt
gcttgcatagtttatgttagcttttatgttccacaaggccctcttggtgtaacaaagaaa
aaacttcggaaagataccgtgacagtgcaaactgatcaaattttcatccttcaaaagctt
gaaaggaacccctatcaaaatgagcactatcgttggtgcatctctgaggactgctcttca
ctgcaggaatgtaaattgtttccagggaagttctcatacgatgtttcttggttccttgtg
gcatctgtgcagaagaaaattgaagttgatgtcaggtcaatccaaactaaaattgtctat
cagcttgtggaagatgaatgtgacaagcattcaccaagttcggaagccagatcaaaggct
gtgaatttcaagttacagaatggaatttcagtccctttcattgtcacatttactttgggg
aagcgaattggttgttacctggacaaagatgaaccatcgtcactttatgaactaatgggt
ttgcggcgatccaagcgtcgatgcatacaacctgagctttacttgggtggtggtgatttg
ctagactcagatgctgatgtggtttggttggggtcatgtaaaacaagaagaaaggaatgt
gagggtgatggcagggttgattcatatagaagagagttttttagttgccaaggaaagatc
aaatctagggagttgaaatcaatggcatctaatctgaaagatcatcaaccttcccttgct
cctcatggaaaacaaaaatctcaaccttctgttgctgctgttaaggatgaaactgatcaa
atggtctgtgaggaggactctcctgacactcgtgttcctgtaaatttttcaacagggggg
tattccaaagcaagagaacatcaacctccccttgctcatcaaagaaaacataaatctcaa
ccttctagtagtcgtgtgaaggaggaaactgttgaaattgtcagtgaggaggattctctt
gatactcatgtttctggcaatttatctagaggtaaaaggaaacataaacctcaaccttct
agtagtcgtgtgaatgaggaaactgttgaaattgtcagtgaggaggactctcttgatact
catgttcctggcaatttatctagaggtgaaaggaaacataaatcccaaccttctatttct
cctgtgaaggatgaaactaatggcatggtcgacaatgaggattcttttgatactcacatt
acgggagagttttcaagagaggatggtgaagtgggttccaggtatatgcacatgaatggt
actcgtaatgtacatagaaccggtactatcgagttggactttttggatgctgaaggtgcc
tggaagggtaaaacttcccataagaaataccaaaggaaacgggactattcttcattttca
gtacgtgagagttttgacaatgcaggaacttatagaaggagaaacagtcgtgtgagtata
tgtggggaaatgttaaagagatgtatggagaacataaagtcctctgtcaataaagaacat
ccactagctattgataagtggaatgaattccgggccactaatttcttagacagacggaac
agagataatgcaccctcaccagatggggaagaggaaccagaaattcaagtattgtggaaa
caaatggaactttgcagggcatcaacttatcttcttcaagacgatgagggttccaatgtt
gctgaggtcgcacaagatacaagtatacagtgtgcatacgtttgcccgcatgaatacaaa
ctcaatgaagaaattggcattgtttgccaattgtgcggctttgtgaacacagaaataaag
gacgtctcccccactttttggcgatttccaagttggactccaaacaagtggtcacgcgac
agagaaaatgcagagccaaatccggatgataatgtgggattttctgatcttttccgcact
cctgctgcctcaaacacgcccttatcagagggggacaaaaatgtctgggccttaatacct
gatctcaaaaggaaattacggctgcatcaaatgagagcgtttgaatttctctggcgacac
tgtgccggttctttggtacctatacttatggatctaacaacccagaacagaggtggttgt
gttatctctcactctcctggggctggtaaaacgatgctcatcattgcattccttgtgagt
tacttgaagttgttccctggatcgcgccctttggtcctcgctccaaaaacagcactctac
acctggtccaaagaaaccattaagtgggaagttcctgttccagtttatcaaatccacgat
ggtgaaacctacagaggtgaagtcttgagaaagaaaaagggaatatctcttgaacatgga
ttcccaaaacccgaccgcaatgctttgcatcttgtggactgcatggaaaaaattcaaaag
tggcttgatcacccaagcattcttctaatgagttattcctattttatgacactcacacgg
gaagattcaaaagattctcataggcggtatttaggccagttgttgcggcaatgccctggg
atcctaatccttgatgaggggcataaccctagaaacaataaatctaggttgaggaaggct
ctgatgaaagttgagacgaggttgagaattttgctctccggtacgttgtttcagaataat
tttggagagtatttcaacactctcactttggcaagaccacggtttgtcgatgatgtgctg
aggaagttggaccgaaactccgggacaacaaataaaggcggaaaaacacgcactgcaatt
gaaaacaaagcaagaagattattcattgttaaaattgctaggaagatcgattcaagtgta
ggaaaagaaagaatgcgtggtttgaatttgttgaggaatttaacgagtagttttatagat
gtatatgatggaggaaatgccgtcaatcttcctgggttacaatgttacacgctcacgatg
aagtcgacgccgaaacaacaaaagcttttgaaaaaacttctaaatcaagtcgccaaatac
aaagggtttccactggaaaaggagtttctggccactctagtttcaatacatccttggttg
ctcaaaactacacctgcttccagtcaatacttcaataagcaagaacttgaaggtcttgag
aaatacaagtttgacctcaagttgggttccaaggtgaggtttgtaatgagtctagtgcct
gaatgcatcatgaggaaagagaaggttttaatcttttgccacaatatttccccgattgat
ctttttgttaatttatttgcatcttcctacgggtggaggaaaggggaagaagttttggtc
cttcaagggaaaatggaactatttgaacgtggaattgcaatggataagtttgagcagagg
gaaggggtggcaaaagtaatgctggcttcaattacagcttgttgtgagggcattaatttg
attgcagcatcaagagtgatcttattggatccagagtggaacccttctaaaacaaaacaa
gccatagcgcgggcttttcgtcccggtcaggagaaagaggtatatgtttatcagctattg
gctagcggttgtatggaagaagacaaatataataggaccgcgtggaaggaaagggtttca
agtatgattctttatagcgaggggcacgtggaggagcattcaaagcagcaaacagaaaag
atcgaggatgatctactaagggagatagtggagatagatggagctaatttgttccataag
atcacacagaatgaaaaaagcttcaaatgggtgggcggtcagagctcctgcatctcaact
ccttcttag
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