Rhododendron vialii: 131314552
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Entry
131314552 CDS
T09330
Name
(RefSeq) exosome complex component RRP45A-like isoform X1
KO
K03678
exosome complex component RRP45
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131314552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131314552
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
131314552
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
131314552
NCBI-ProteinID:
XP_058199253
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Position
13a:32086120..32096303
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AA seq
466 aa
AA seq
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MEQRLANTLRMTVNEKKFIETALLSDLRVDGRSPFDYRCVTIKFGREDGSSEVQLGQTHV
MGLVTSQLVQPYRDRPNEGSLSIYTEFSPMADPSYEVGRPGESSVELGRIIDRGLRESRA
VDTESLCVIAGKLVWAIRIDLHILDNGGNLVDAANIAALAALSTFRRPECTLGGEDGQEV
IIHPPEVREPLPLIIHHLPIAVTFGFFSEDNIVVIDPTHYEEAVMRGRMTATVNTSGDIC
AIQKAGGVGVMQSLIMQCLRIASVKAADITSKIKNSVESYDTERALRKIKRHSSSPALDV
CEPCAKWETLEKSVDQKGVDDLSGHHLERLKLTSEESGVCHINNMECGSQLSEQVRTNRK
DGQARSFIGGPSSWDPYSKGVNSDALKASLASHGVLKSHQKMEESKHEKPSETGKDQLLA
DIKLAPTLEDGAIGTGVQTIGVKTLKDAVKPKHKRKKKSSSNIGAS
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaggttggctaataccttgaggatgactgtgaatgagaagaaattcattgag
actgccctactatcagatctccgagttgatggacgaagtccatttgattatagatgtgta
actatcaagtttggtagagaagatggttcgtcagaagtgcagcttggtcagactcatgtt
atgggtttggtaacttcccaactagttcaaccttatcgcgacaggccaaatgaagggtct
ctttcgatctataccgagttctctccaatggctgatccttcgtatgaagtaggtcgtcct
ggagaatcttctgttgagttgggacgcataatagaccgtggtttaagggaaagtcgggca
gtagacacggaatcactgtgtgtcattgctgggaagttagtatgggcaattcgcattgat
ctccacattctagacaatgggggaaacctcgttgatgctgccaatattgctgctttggct
gctctctcgacattccggcggcctgaatgtacattaggtggagaagatggtcaagaagtg
ataatacatccacctgaggtgagggagccacttcctttgataatacatcatctccctata
gcggtgacctttgggtttttcagtgaggataatatagtggtaattgacccaacacattat
gaagaggctgttatgagggggagaatgacggctacagtcaatacaagtggtgatatttgt
gctattcaaaaagctggaggagtgggcgtcatgcagagtcttatcatgcagtgtctgaga
attgcttctgtgaaggccgctgatataacaagcaagattaagaattctgttgaatcgtac
gacactgaaagggcattgcggaagatcaagcgtcattcatcttctcctgctttggatgtt
tgtgaaccttgtgcgaagtgggagacgctagaaaaatctgttgatcagaagggagtcgat
gatttgtcggggcatcatttggagaggttaaagttgacatcagaggaaagtggtgtttgc
cacattaataacatggaatgtggaagccaattatctgaacaagtcagaaccaacaggaaa
gatggccaagctaggagtttcattggtggaccctcaagctgggatccgtactcaaagggc
gttaattctgatgcattgaaagcttctctagcgtcacatggagtattaaaatcccatcag
aagatggaagaatcaaaacacgagaagccctctgaaactggaaaagaccaacttcttgcc
gatattaagttggctcctacactagaggacggggcaatcggtaccggagtacaaactatc
ggagtgaagacattaaaagatgcagtgaaacccaagcacaaaagaaaaaagaagtcatcc
tccaatattggggcgagttag
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