Rhododendron vialii: 131324368
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Entry
131324368 CDS
T09330
Name
(RefSeq) uncharacterized protein LOC131324368
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131324368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131324368
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131324368
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131324368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
131324368
NCBI-ProteinID:
XP_058212330
LinkDB
All DBs
Position
1a:21224837..21262764
Genome browser
AA seq
2420 aa
AA seq
DB search
MLPFSSTLSAQIRYLLQSLNGSNSDHVFQELCQYVGYGTEGSILLLQTCLDHLNIYGKDL
KNLQPEPIVGPIFKFVLDKPNFSTVLSESLRSAAINEEFVESLSNALHLSASEKIGFGLA
LLDSENSDVRMCGKNFCMAQIGELFTSHACVDSIEQIQNIFMFLHRSEGLSKHVDSFVQM
LSLLQLKESDRFILAPLLSKELDEATVLRSLDLFDEGDENDFDIVLAEMEKEMSMADVMK
ELGYGCTVNVSQCTETLSLFLPLTAMTVSRILGTIARTHAALEDNQNAFSTFCSALSTGS
STDMPSLSSWNSDVLINSIKQLAPETNWTSVVENLDHDGFYFPNEAAFSFFMSVYRHACQ
DPFPLHAICGSVWKNTDGQLSFLKHAVAVPPEVFTFAHSGRQLVYVDAVHGQQFQFGHKN
HAWLSLDLLEVLCLLAERGHASTVRSMLNHPLEHCPEVLLLGMAHINTAYNLLQFEISST
VFPIILRNSAGSGTILQLWQVNPNLLLWGFLDAYNTNPDDITRVLDVCQELKILLQVLDM
VPSYFGIRLAALGSRKELVDLENWLSSNLTTYKDVFFEECLKFLKEIQFGVSQDVSVDHF
NPSGGLPNVYSETSPTFLKVLQAHTGLIISSQLSEEVGKLTFMNANSRMKSSGATDSSPS
DGYTDDIESEANSYFHQMFSGQLTIDTMIQMLARFKESPENREQSIFECMIGNLFEEYKF
FPKYPERQLKIAAVLFGSLIKHQLVTHLTLGIALRGVLDALRKPPDSKMFVFGTKALEQF
VDRLIEWPPYCNHILQMSHLRSSHSELVAFIERALERISLGHSESDGGHNAPMDLQHGSI
QANEPNLEMPGPSFPLIGSVGTQPGPHISSSMQLQLKHQIRLDESQKVSVTSSNYMKPLT
STGGQSSLVSTSDAPSIQKPQSSASVSSVLSSSTGFTRPSRAITSARFGSALNIETLVAA
ADRRETPLEAPASEIQDKISFIINNLSSTNFEAKAKEFSEILTEQYYPWFAQYMVMKRAS
IEPNFHDLYLKFIDKVNSKPLNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLG
KITIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGI
LGLLAEIYAMPNLKMNLKFDIEVLFKNLVVDLKDVTPTSLLKDRVRQVEGNPDFSNKDAG
VPQQQIVAEVKSGTISALNQVELPLEVASPSHPGGHSHILSQYAAPLHPLTEDEKLAALG
LPDQLPSAQGLLQRQSSFSVSQLPTPTSNIEQQVIVNPKLHALGLYLHFQSVVPIAMDRA
IKEIVSGIVQRSVSIATQTTKELVLKDYAMELDETRIRNAAHLMVASLAGSLAHVTCKEP
LRGSISSQLRNSLQGLNIASDLLEQAVQLVTNDNLDLGCALIEQAATEKAIQTIDGEIAQ
QLSIRRKHREGVGPAYFDSGIYAQGHAGVLPEALRPKPGRLSHSQQRVYEDFVRLPWQNQ
SSHSSNALAIGSTGSPASSGMSRVYSSASGQLNPVMYSSGVGNTGIQHQPLDIVSEEMES
SSAQLHSASSALIGAADGVNPHDFENDAVVASFPSATTPELHSLEISNIVKESGASSHPL
PSTPTTDRLGSSTSEPLLTTGDALEKYQIISEKLESLVTNDAMDADIQGIIVEVPGIILR
CISRDEAALAVAQKVFKGLYENALNSAHVAAHVAILAAIRDVSKLVVKELTSWVIYSDED
RKFNKEITIGLIRSQLLNLAEYNVHMAKLLDAGRNKAATEFAISLIQTLLINDSSVMSEL
HNLVDALAKLAARPGSPESLQHLVEVARNPAANAATFSSISVGKEDNTRQAREKKAPVPP
ASNKEDYNAVDPVEADPAGFREQVSMLFAEWYRICELPGANDAACAHYILQLQQSGLLKG
DDMSDRFFRCLTELSVSHCLSSEVINSAPLQSPQQVHPLSFLAIDIYAKLVFSILKFFPV
DQGSSKLLLLPKVLAVTVRIIQKDAEDKKVSFNPRPYFRLFINWLLDLGSMDPVFDGANF
QILIAFANAFHAVQPLKVPGFSFAWLELVSHRSFMPKLLTGNAQKGWPYMQRLLVDLFQF
LEPFLRSADLGEPVHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILS
AFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDVALKTKQIKGDVDEYLKTRQQGSSF
LTELKQKLLLSPSDAVRAGTRHNVPLINSLVLYVGMQAIQQLQARTPPHTQSMAGSVPLA
VFLVGAALDIFQTLIMDLDTEGRYLFLNAIANQLRYPNNHTHYFSFILLYLFAESNQEII
QEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSC
GGPKPVDESVVTGGISDNMH
NT seq
7263 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttctcttccaccctatcggcccagattcggtacttgctccagagcttgaac
ggatcaaactccgaccacgtcttccaagagctctgtcagtatgttgggtatggaacggag
gggagtatattgctcctgcaaacatgcttggatcacctgaatatatatgggaaagatttg
aagaatctgcaaccggaaccaatagttggtcctatcttcaaatttgttttggataaacca
aatttcagtacagtgctctctgagtcattaagaagtgcagcaatcaatgaagagtttgtt
gaaagtttgtcaaatgctttacacttgtcagcatctgagaaaattggatttggacttgct
ttgttggattctgaaaattctgatgtcagaatgtgtgggaagaacttctgcatggctcag
attggggaactatttaccagtcatgcgtgtgttgactctattgagcaaattcagaatatt
ttcatgtttctccatcgatctgagggcctgtccaagcatgtagattcttttgtgcagatg
ttatccttattgcaattgaaagagagtgaccgatttatattagctccattgctctccaag
gaattggatgaggcaactgtgttgaggagtttggatttgtttgatgaaggcgatgagaat
gattttgacattgttctagcagaaatggagaaagagatgagcatggccgatgtaatgaag
gaattgggttatggatgcacagttaatgtctcgcagtgcacagagacgctatccctgttt
ttaccactgacggcaatgactgtctctaggattcttggcacaattgcccgcacgcatgct
gcactcgaggacaatcagaatgcattttcaactttctgttctgctcttagcactggcagt
tcaacagatatgccatcgttgagctcatggaatagtgatgtccttatcaattcaatcaag
caacttgctcctgaaaccaattggactagtgttgttgaaaacctcgatcatgatggattc
tacttccctaatgaggcggcgttttccttttttatgtcggtttatagacatgcatgccag
gatcctttcccactccatgctatttgtggctcggtttggaagaataccgatggccaacta
tcttttcttaagcatgctgttgcagtaccccctgaagtatttacctttgcacattctggg
aggcaattggtgtacgttgatgctgtgcatggccaacaatttcaatttggacacaaaaat
catgcatggttaagtcttgacctgttggaggttttgtgtctgctagctgagagaggtcat
gcgagcactgttcgatcaatgcttaaccatcctcttgagcactgccctgaagtgttgctc
cttgggatggctcacattaatactgcttataacctcctacagtttgagatttcttcgact
gttttccccatcatacttagaaatagtgctggaagtggtacgattcttcagctgtggcag
gttaaccctaatcttttgctgtggggtttcttagatgcctacaacaccaatccagatgat
attacgagagttttggacgtctgccaggagctgaagatactcttacaagtattggatatg
gtgccttcatattttggtattcggctggctgcccttggttcacgaaaagaacttgtagac
ctagagaactggttgagctctaatttgactacttacaaagatgttttcttcgaggagtgc
ctcaagttcttgaaggagattcaatttggtgtctctcaggatgtttctgttgaccatttt
aacccttctggtggtcttccgaacgtttattcggagacgagtcctactttcttgaaggtt
cttcaagctcatacgggcttgattatctctagccagctttctgaagaagtggggaagttg
acatttatgaatgctaattcgagaatgaagagtagtggggctactgattcatcaccctct
gatggatacacggacgacattgagtcagaagccaactcttatttccatcaaatgttttct
ggtcaattaaccattgacacgatgattcaaatgcttgctcggttcaaggaatctcctgag
aatagggagcaatcgatctttgagtgcatgattggcaatctttttgaagaatacaaattt
ttccccaagtaccctgagaggcagctcaaaattgccgcagttctttttggctctctcatc
aagcatcagcttgtaactcatctcacacttggtattgccctacgaggtgttttggatgca
ttgcgtaaacctccagattccaaaatgttcgtttttgggacgaaggctctggaacagttc
gtggaccgtttgattgaatggcccccgtactgcaatcacatcttacaaatgtctcatctg
cgtagttctcattctgagcttgttgcgttcattgagcgggcacttgaaaggatttcattg
ggccattcagaatcagatggaggacataatgctcctatggatctacaacatggttctatt
caagctaatgaaccaaatctggagatgcctggtccatcctttccattaattggttctgtt
ggtacccaacctgggccacatatatcttcttcaatgcagcttcaattgaaacaccaaatc
cgtttggacgaaagtcagaaagtctcggtaacatcatctaactacatgaagcctcttact
tctactggagggcaatcttcacttgtttccacaagtgatgcacctagcattcaaaagccc
cagagttcagcaagtgtttcttctgtgctgtcttcctctactggttttacccgtccatct
cgagcaattacctcagcaaggtttggctctgctttaaacattgaaacccttgttgctgct
gcggatagaagagaaactcccttggaggctccagcatcagagattcaggacaagatatca
tttattattaataatttatcttctacaaattttgaagctaaggcaaaggaattttctgag
attttgactgagcagtactatccatggtttgcccagtacatggtaatgaaaagagcaagc
attgagccgaattttcatgatctgtacttgaaattcatagacaaggttaactcgaagcca
ttaaacaaagagattgtacaagccacttatgagaactgcaaggttcttttagggtcggag
cttataaaatcaagttcagaagagcgttccttgctaaagaacctaggaagttggcttggg
aagatcacaattggcagaaatcaagttttgagggcacgtgagattgatcccaaatcgttg
atcatagaggcatatgaaaagggtttgatgattgctgtaatcccattcacatccaagatt
ttggaaccttgccaaagcagtctagcttatcaacctcctaatccttggaccatgggtatt
ctaggattactggctgaaatttatgcaatgccaaatctgaaaatgaacctcaagtttgat
atcgaggtcctattcaagaatcttgttgttgatctgaaggatgtaactcctacttctctt
ctcaaggacagggtaaggcaagttgaaggaaatcctgacttttccaacaaagatgctggg
gtgcctcaacaacagatagttgctgaagtcaaatctggtacaatatctgcactaaatcaa
gttgagctaccacttgaggttgccagcccatctcatcctggtggccattcacatatattg
tctcagtatgctgctcctcttcatccactgacagaggatgaaaagctggcagctttgggc
ttacctgatcagctcccttctgctcaaggactactacaacggcaatcctcattttctgtt
agtcagcttccaacgccgacatctaatattgaacaacaagttattgtaaacccaaagctt
catgcccttggcctttacctgcattttcagagtgtggttccaatcgctatggatagagct
atcaaggagatagtgtctggtattgtgcagcgaagtgtttctattgccactcaaacaacg
aaggaactcgttttaaaggattatgccatggagttagacgagacccgcatacgtaatgca
gcacacttaatggttgccagtttggccggaagcttagctcatgtaacgtgcaaggaaccc
ttgcgtggctcaatatcaagtcagctcaggaattcactccagggtctaaatattgcaagt
gaccttcttgaacaagctgtacaacttgttaccaatgataaccttgatctgggctgcgca
ctaattgaacaagctgcaacagagaaggcaatacaaaccattgacggtgaaatagctcaa
caactttcaataagaaggaagcatagagaaggtgttggtccagcatattttgattcagga
atctacgcccaaggtcatgcaggtgttttgccagaagcactccgccctaaacctggccgc
ttatcccattctcaacagcgagtttatgaggattttgttcggttaccatggcagaatcag
tcaagccatagctcaaatgctctagcaattggttctacaggttcacccgccagttctggc
atgtccagggtttatagttcagcatctggacaactgaaccctgtcatgtactcatctggc
gtaggaaacacaggaattcaacaccagcccttagatattgtttctgaggagatggaatct
agttcagctcagcttcacagtgcttcctcagctcttattggggcagctgatggagttaat
ccacacgattttgaaaatgatgccgttgttgcgtcatttccttcagccacaacccctgaa
ttacattctttggagatttccaacattgtaaaagaatctggagcttcttcgcatccttta
ccttcaactcctacgacagatcgccttggaagtagtacttctgaacctttgttgaccaca
ggcgatgcattggaaaagtaccagatcatttcggagaagctggaatctctggtgacaaat
gatgctatggatgcagatattcagggcattattgttgaggttccaggaatcattctcaga
tgtatcagtcgagatgaagctgcattggctgtggctcaaaaggttttcaagggtttgtat
gaaaatgctttaaatagtgctcatgttgctgctcatgttgccattctggctgccattcgt
gatgttagcaagctggttgttaaggagctgactagttgggtgatttattcggatgaggat
cgaaagttcaacaaagaaattacaattggccttattcggagccaattgctcaaccttgct
gagtacaatgttcatatggcaaagctacttgatgcaggaaggaataaagctgcgactgag
tttgccatttccctgattcaaacattgttgatcaatgattccagtgtcatgtctgaactt
cataatctcgttgatgctttggcaaagcttgcagcaaggcctggatctccagagtcgtta
caacatctggttgaggttgccaggaatcctgctgcaaatgctgctacgttttcttcaatt
tctgtggggaaggaggataacaccagacaagctagagaaaaaaaggctcctgttccccct
gcatcaaacaaggaggactacaatgctgttgatccagtggaagcagatcctgctggtttt
cgtgagcaggtttccatgctgtttgccgaatggtacagaatatgtgaacttccaggtgca
aatgatgcagcttgtgcccattacatcttacaattgcagcaaagtggactgcttaaaggg
gatgacatgtcagatcgatttttccgctgcctaacggaactttctgtatcacattgctta
tcttctgaggtgataaattctgcccctctgcaatcacctcaacaagtccatcccctctcc
ttccttgctattgacatctatgcaaaacttgtattctcaatcctaaagtttttccctgtg
gatcaagggtcaagcaaactcttgcttctaccaaaggttctggcagtgaccgtgagaatt
atacagaaagatgcagaagacaagaaagtttcttttaatccaaggccatatttcagattg
ttcattaactggctacttgatctaggttccatggaccctgtctttgatggtgcaaacttt
cagattttgatagcttttgcaaatgcatttcatgctgtacaaccccttaaagttccggga
ttcagcttcgcatggcttgagttggtgagtcataggagtttcatgccaaagttgctaact
ggaaatgctcagaaagggtggccttatatgcagcgcttgctggtagacttatttcaattc
ctggagccattcttgaggagtgctgaccttggggagccggttcattttctgtataaaggc
actctaagggtgttactagtgctacttcatgatttcccagagttcctttgcgattaccat
ttcagcttctgcgatgtgatacctccaagctgcatacagatgcgaaacataatcctcagt
gcatttccacgcaatatgaggcttccagacccttctactccaaatttgaagattgatctg
ctagcagaaatcagtcagtctccgcgtattctgtctgaggtcgacgtggctcttaaaacg
aaacaaatcaagggtgatgtagatgagtatctaaagacgaggcaacagggctcttcattt
ctaactgagttgaagcagaaattgctgctttcaccaagcgatgctgttcgggctggtacc
cggcataatgtaccattgatcaactcccttgtgctttatgttggaatgcaggctatacag
cagcttcaggcgagaactcctcctcacacacagtcaatggccggtagcgttccattagct
gtgttcttagttggtgctgccttggacatcttccagacattgattatggatctagatact
gagggacgttatctctttttgaatgcgattgctaaccaactgcgttatccaaacaatcat
acacattacttctccttcatccttctttacctatttgcagaatcaaaccaggaaatcatt
caggagcaaatcactagagttttgttggaaagactgattgttaaccgacctcatccatgg
ggccttttgattaccttcatcgagttgattaagaatcctagatacaatttctggagtcgg
tcttttacaagatgtgcaccagagattgagaagctctttgaatcagtatcaagatcctgt
ggtggcccaaaacctgtggatgagagcgtggtcactggcgggatatctgacaacatgcac
taa
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