Rhododendron vialii: 131332626
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Entry
131332626 CDS
T09330
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131332626
09123 Folding, sorting and degradation
03018 RNA degradation
131332626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131332626
03041 Spliceosome [BR:
rvl03041
]
131332626
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131332626
mRNA degradation factors
5'-3' decay
Lsm complex
131332626
Spliceosome [BR:
rvl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
131332626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
131332626
NCBI-ProteinID:
XP_058222934
LinkDB
All DBs
Position
1a:48146595..48151318
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AA seq
150 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEESKSRTDRKPPGVGRGRGRGREDGTSGRPAKGIGRGFDD
GAAKGMGGGRGRGGPGGRTGGSRGSSRGSR
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgctttcgctgctcaagaccgctcaaggacaccctatgttggtggaactgaaa
aatggggagacctacaatgggcatttggtaaactgtgatacttggatgaacatacatctt
cgtgaagtcatttgtacttctaaggatggagataggttttggcgaatgcctgagtgctat
atccggggaaatacaattaagtatcttcgagttcctgacgaggtgatagataaagttcag
gaagagagtaagagccgtacagataggaagccacctggagtagggcgtggaagaggaaga
gggagagaggatggcacaagtgggcggccagccaaaggcataggacgtggctttgatgat
ggagctgctaaagggatgggtgggggtcgaggcaggggtggtcctggtggaagaactggt
ggaagcagaggtagctcgcgtggcagccgatga
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