Rhagoletis zephyria (snowberry fruit fly): 108360305
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Entry
108360305 CDS
T08513
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108360305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108360305
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108360305
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108360305
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
CNOT1_1st
DUF3819
CNOT1_HEAT
DUF4327
CCDC53
Motif
Other DBs
NCBI-GeneID:
108360305
NCBI-ProteinID:
XP_017468019
LinkDB
All DBs
Position
Unknown
AA seq
2497 aa
AA seq
DB search
MNQLKFTLAQIGILVKQLNKKNFAETSESINQYIKDTGLEADRHCLRCLFSVINFNGTLS
TSPNSNYNFIVQAQAKLLGSQLEIQLTRVSAISNICFAVDNCFPQQKTLKPTPQLIAQIA
KITGISKLCEVVLSLALTHSTQPDLRRYSQEHLKLSFSELIESFLDKNETSSAARSTLPE
VSIDILQLLLIYLDEFVSKELKNKFLGLLREQFPLERVPLILAPHLYRQSDCDFEEVVSE
QTAPLSIADAKFDEKDNTTPAADGVIACQHLTEIGIEDIYDNLCQTILTTQVNNNIMDTS
WINLILEIGYEFTSSVEECKNHLRCGSRELQSQDVAKIIGLMCRRHSSLLDCNVNLGTPA
NFWPGQAGTVPGTQQQQNVANNNDGSNVTGSGVDKTSNVNDKKDKVGGSAAGTTSTETTQ
AWKPDVFVQALKEVVSQLNWKEVCLELDHPEFILKDRIGLDLLLTIFRLGTQSALFPHPE
CIYRHWQNVNGQLSLIAVMLKNPDLCSFSDYIFTAAPVEMLKTPPDTDNKEVCAWKSLHL
VEVLLYIADQGYYPQVIELFKFPAQHCPDILFLSLLHINPPITALRQELFSQLIPTFLTN
HPNSGVILLNAWNSANFGVILRPIIMQAMSEWYQRGTEYDQVKLSRILDVAQDLKALSTL
LNERSFLFVIDLACLASRREYLKLEKWLSDKIREHGEPFIQAILKCLQRRCPQITNAKIP
ESQLPSKQAQLPPETVTTMLQCLQACIGNVPPEIADLIMQMTANCSIMANKARAAVPPLV
PQLPGVMRGHRGMDMGGGVPGVPPPPFSANLNAQQMFGPTMDTLSNLTTNIANLNLGGPN
GAFNFGNVLGNLASTPASPSRLMNPAASPYPLNAMQMPPPNVGNLARMPPTAPQPTPTPP
NPINPGMADLQGPVSKEVEDEANSYFQRIYNHPPHPTLSIDEVLDILQRFKDSNIRREQE
VYQCMLRNLFEEYRFFPHYPEKELQITAQLFGGIIERNLVPTCVALGLALRCVLDALRKQ
DSKMYNFGITALDRFKNRLHSYNKYCEYIRSIAHFHEFPPHLIQYVECGYLQQEPPPAKI
QMLMSGTGQQAPPDSIYRSNSVTGNLVTTPTQQKPMVVAQSIHASRMKSIATATNIDTLL
VANQEEKVTIPPEPVQDKTAFIFNNLSQLNIPQKCEEIKEIMNKDYWPWLAQYLVLKRAS
LEFNFHSLYFNFLEALKNPDINKYVTKETLRNIKVLLRSDKGVVNFSDRSLLKNLGHWLG
MMTLGRNKPILQIELDLKTLLAEAYHKGQQELLFVVPFVAKILESSNKSKVFKTPNPWTM
AIMNVLGELHQEPELKLNLKFEIEVLCKTLNIELQKLKPIVYLKDPSRSMNIEHQMSQPK
PKSIEAPPQQQQQQQQQQQQQQQQQQQQQQQQPPQRQTPGPGQMGPNDPDAQALIMGGGS
GVGSGAGSNVPGGVVPSPSISNESVGQVIMQAPEPRFSFVDINIANFHLIAQHVVLSPNI
TFLHANPGLKHIVLNAIERTITEWLQPVVDRSVRIAVTTTEQIVRKDFGLDPDENRMRTA
AHQMVRYLSAGMAMITCKDSLSQTLTNNIRKAFLSALTGGPSYQEIEAAAIQLSNDNVEL
ACAFIQKTAAEKSTPEIDRRMATDFDTRKMTRDEGGRFYDTQTLAYQTERMPEQVRLKVG
GIPHTQFAVYAEFARNIPGFQPMTERDIALFLPKPQEIAPASFGTDELGLMYADLAGKME
AFLNSTINVSTLQLQASKMHALLNALMVTRRIRDNESALNLLTRVVEGLVEGLVNIPDHI
EQMKLYRDIHLRILTLLQNTFGTGVTERAITKCIFDIRDEVRYNVEAIKLLITSHFINVP
QFDLLLREAMDNGNNYMAVTFAMTLMERLLDGRSSATLETEMTGTFEMLGRLPQNRHRYP
EALTHQIDMMDAGPFGGADRYLAGATQYMHSGMQHVRANDCDDPPGLQEKTEFLLKDWVS
IYNQSNNLSRETKIFTSFVQKMNMYGILKTDDLITRFFRQATQICIDLVYRILNDPSNSP
LQARTKIFHWIDAFVHLIALLVRHSGEAGNPTTKINLLNKVLGIVLGILLQDQELHGTAF
QQLGYHRFFVMLFLELSSPDAVLESLMHSIMTAFSHTYHLLNPALAPGFCYAWLELISHR
IFIGRILAQIPQQKGWPLYSQLLLDLFRYLAPFLRNAELAKPVQLLYKGTLRVLLVLLHD
FPEFLCDYHFGFCDAIPPNCIQMRNIILAAFPRNMRLPDPFTPNLKVDMLAETATAPKIC
SNYVFNIQPANFKKDLDSYLKARAPVTFLSELRSHLQISNEPGSRYNIPLMNALVLYVGT
QAISHIRSKNFVPNTSNIAHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYF
SCAVLHLFAEANSEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPIYKFWDHDFVH
CAPEISRLFESVARSCMVKSNHPPQMNNMDGEIQEIN
NT seq
7494 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaactgaaattcacgctagcgcagattggtattttggtcaaacaactgaacaag
aaaaattttgctgaaaccagcgagagcataaatcagtacattaaagatactggcttggaa
gcggaccgtcattgtttgcgctgcctattctcggtcatcaattttaatggtacgctgtca
acaagtccgaattcgaactacaatttcatagtacaagcacaagcaaagttacttggctct
cagttggaaattcaattgactagagtgtctgctatatcgaatatttgctttgctgtggac
aattgctttcctcaacaaaagactcttaaaccgacaccacaacttatagcgcaaatagct
aaaataactggaataagtaaactctgtgaagtggtattgtccttagcactaacacactca
acccagcctgacttacgtcggtactctcaggaacacctgaaactttcattttccgaacta
attgaatcattcttggataaaaacgaaactagctctgctgccagaagcaccttaccggag
gtgtcgattgatatcttgcaactactcctaatttatctagatgagtttgtaagcaaagaa
ctgaagaataagttcttgggtttattacgagaacaatttccgcttgagcgggtaccgctc
atattagcgccacatttatatcgtcaatctgattgtgatttcgaagaggtagttagtgag
caaactgcaccattgtccatagcggatgcaaaatttgatgaaaaagacaacactaccccg
gctgctgatggagtcatcgcttgtcagcatttaacggaaattggcattgaagatatctat
gacaatttatgccagacaatattgacaacgcaggtgaataataatattatggacacatcc
tggattaatttaatcctagagattggttacgaattcacttcgagcgttgaagaatgtaag
aatcatctacgttgtggttcgcgtgaacttcaatcacaggatgtggccaagatcattggt
cttatgtgccgtaggcactcatcactacttgactgcaatgtgaatttgggtactccggcc
aatttttggcctggccaggcgggcactgtgcccggcacacaacaacaacaaaatgtggcc
aataataatgatggcagtaacgtaacgggcagtggtgttgataaaacatccaatgtgaat
gataaaaaagacaaagtcggcggaagcgcagccggaacaaccagcacagaaacaacacag
gcatggaaaccagatgtgtttgtacaggcactgaaggaggtagtgtcacagttgaactgg
aaggaggtgtgcttggaactggatcatcctgaattcatattgaaggatagaatcggcctc
gaccttctgctcactattttccgcttgggcacacaatctgctctatttccccatccagaa
tgcatataccgtcactggcagaatgtaaacggacagctatcgcttatagcggttatgcta
aagaatccagatttgtgctccttttccgattatatctttactgcagcaccagtggaaatg
ctaaagacacccccagacactgacaacaaagaggtttgcgcctggaaatctctgcactta
gtggaagttttactttatattgccgatcaaggctactacccacaagtgatagaattgttt
aagttcccagcgcaacattgcccggatatactatttctatcattattacacattaatcca
ccaataactgcactacgacaggaactcttcagtcaactcataccgactttcctaacaaat
catccgaattccggtgtaatactgctcaatgcatggaattccgcaaattttggggttatt
ctgcgtcccatcattatgcaagccatgtcagaatggtatcagcgcggcaccgaatacgat
caagtcaaactgtcgcggattctcgatgtagcgcaagatttaaaagctctatctacgctg
ctcaatgaacgttcttttctgttcgtgattgatttggcatgtctggcctcgcgtcgagaa
tatctaaagttggaaaagtggctgagtgataagatacgcgagcatggtgaacctttcata
caggctattttgaaatgtttgcagcgacgttgtccccaaattaccaatgctaagatacca
gagagtcagttgccatccaaacaagctcagctaccacccgaaactgtaacaactatgttg
caatgcttacaagcttgtattggcaatgttccaccagaaatagctgatctcataatgcaa
atgacagctaactgttccattatggcaaataaggcaagagctgccgtaccaccgttagtg
ccacagcttccgggtgttatgcgtggacatcgcggtatggatatgggcgggggtgtgccg
ggagtgccacccccacctttctctgccaatttgaatgcacaacaaatgtttggccccaca
atggacaccctatctaatttaacaacaaacatagccaatttgaatcttggtggacccaat
ggagccttcaatttcggtaatgttctaggtaatttggcgtctacaccagcttctccatct
cgtcttatgaatccagctgccagtccatacccattgaatgcaatgcaaatgccccctcct
aatgttggcaatttggcacgtatgccaccaacagcaccacaacccacacccacgccacca
aatcccatcaatccgggcatggccgatctgcagggtcctgtctccaaggaggtcgaagat
gaggccaattcatacttccaacggatctacaatcatccgccacatcccacactctcgatt
gacgaagtactcgacatactgcaacgtttcaaggattccaacatacgtcgtgaacaggaa
gtctaccaatgcatgttgcgtaacctcttcgaagagtatcgcttctttccccattatccc
gaaaaggagcttcaaattaccgcacaattatttggtggcattattgagcgaaacttggta
ccaacatgtgtggcattaggtttagctttacgttgtgttttggatgctttacgcaaacag
gactcgaagatgtataactttggcataacggcattggatcgcttcaaaaatcgtttacac
tcatacaacaaatactgcgaatatattcgttccattgcacattttcacgaatttccaccg
catttgatacagtatgtggaatgtggctatttgcaacaggaaccaccaccagctaagata
caaatgctgatgtctggcactggacaacaggcgccgcccgattcgatttatcgcagcaat
tcagtgaccggcaacttggtcacaacgccaactcaacaaaaacccatggttgttgctcag
tctatacacgcttcacgtatgaaatctattgccactgcaactaatatcgatacattattg
gtggccaatcaggaggaaaaagtcactataccgcccgaaccggtgcaggacaaaaccgca
ttcatattcaataatttgagtcaactgaatattccgcagaaatgtgaagagattaaagag
attatgaacaaggattattggccctggctagcacagtatctggtgttgaagcgcgcttca
ttggagttcaactttcactcgctgtatttcaatttcttggaggcattgaagaatcccgac
atcaataaatatgtcaccaaggagacattgcgcaacatcaaagtcttgttgcgttccgac
aagggtgtggtgaatttctccgatcgcagtttattgaaaaatctcggtcattggttgggc
atgatgactctgggtcgcaataagcccatactgcaaatcgaattagacttgaagacatta
ctagccgaggcctatcacaagggacaacaggaattactttttgttgtgccatttgtggcc
aagattttggagtcgtcgaacaagtcgaaggtttttaaaacaccgaacccctggacaatg
gctatcatgaatgtgctaggcgaattgcatcaggagcctgaattgaagcttaatttaaag
ttcgaaattgaagtgctttgcaagacgttaaatattgaattgcagaaactgaagccaata
gtgtatctaaaagatccttcgcgttcgatgaatatagaacaccagatgtcgcaaccgaag
ccgaagagtatagaggcaccgccacaacaacagcaacaacaacaacagcaacaacaacaa
cagcaacaacaacaacagcaacagcagcaacagcaaccgccacaacgccaaacaccgggt
cctggacaaatgggacccaacgatccagacgcacaagccttgattatgggcggtggaagt
ggtgttggcagtggagctggtagtaatgtaccagggggtgtagtgccttcgcccagcatc
agcaacgaatcggtcgggcaggtcattatgcaagcgccagagccacgtttctcatttgtg
gacataaatatagccaatttccacctcatcgctcaacacgtggtgctttccccgaatatc
acattcttgcacgccaaccccggcttgaaacatattgtgctgaatgcaattgaacgcaca
atcaccgagtggctgcaaccggttgtagatcgtagtgtgcgcattgctgtgaccacaaca
gagcagattgtgcgtaaagattttgggctcgatccagatgagaaccgcatgcgcacagct
gcacatcaaatggttcgctacttatcggctggcatggctatgattacttgcaaggactcc
ttatctcagactcttactaataatatacgtaaagctttcctatccgcactgactggtgga
cctagttatcaggaaatcgaggccgctgcaatacagctaagcaatgacaatgtcgagctc
gcctgcgccttcatccaaaagacagctgctgagaaatcaactccagaaatcgatcgacgc
atggccaccgacttcgacacgcgcaaaatgaccagagatgaaggaggtcgtttctatgac
acgcagacattggcctatcagacagagcgcatgccagagcaagttcggttgaaagtaggc
ggcatcccacatacacaattcgcagtttacgcggagttcgctcgcaacatacctggcttc
cagccgatgactgagcgcgatatagctctattcttgcccaagccgcaggagatagcgcct
gcttccttcggcaccgacgaacttggtctcatgtatgccgatttagcaggcaaaatggaa
gcattcctcaacagcaccataaatgtgtccacattgcagctacaggctagcaagatgcat
gcgctgctcaacgctcttatggtaacgaggcgaatccgtgataatgaatcggctctgaac
ctcttgacacgtgttgtggagggtcttgttgagggccttgtaaacatacccgaccacatt
gaacaaatgaaactgtaccgcgatatacatttgcgcatattgactttgctgcagaacaca
ttcggcacaggagtgacggagcgtgcaatcaccaagtgcatcttcgacatacgcgatgag
gtgcgatataatgtggaagcgattaaactgctaatcacatcacattttatcaatgtgcca
caattcgatttgttgttgcgcgaagccatggacaatggcaataattacatggcggtcaca
tttgctatgacgttgatggaacgtctgcttgatggacgctcgagcgctacattggaaaca
gaaatgactggaacattcgagatgcttggacgtttgccacagaaccgtcatcgctatcca
gaagcgttgacccatcagattgatatgatggatgccggaccgtttggcggcgctgatcgt
tacttagcaggtgccacacaatacatgcactcgggtatgcaacatgtgcgggcaaacgac
tgtgacgatccgccaggcttgcaagagaaaacagaattcctgctcaaagactgggtctcc
atttataatcaatccaacaatttgtcgcgtgaaaccaagatctttacctcattcgtccaa
aaaatgaatatgtatggtatattgaaaaccgacgatttgataacgcgattcttccgacaa
gccacacaaatctgcatcgatttggtatatcgcatactcaacgatccaagtaattcacca
ttgcaagcgcgcaccaaaatcttccactggatagacgcttttgtgcatttaattgccctg
ctggtacgccactccggcgaagcgggcaatcctactacgaaaattaacctgctgaacaag
gtgctcggaatcgtactaggcatattgctgcaggatcaagaactgcatggcaccgcattc
caacagctcggctaccatcgctttttcgtgatgctattcctggagctgagctctcccgat
gctgtgctggagagtctgatgcacagcattatgactgctttttcgcacacgtatcacctt
ctaaacccagcgttggcacccggattttgttacgcttggttggagttgatctcacatcgc
atttttatcggacgtatactcgcacagataccgcaacagaagggatggccactgtactcg
cagctgctactcgatctgttccgctatctggcaccattcttacggaacgccgagctagcg
aagcccgtacagctgctgtacaagggaacgttgcgcgttctgctcgtgctactgcacgac
ttccctgagtttttatgtgactaccactttggcttttgtgatgcaataccgcctaattgt
atccaaatgcgtaacataatattggctgcttttccccgcaacatgcgattgcccgatccc
ttcacacccaatcttaaggtggatatgttggctgagactgcaacagcgcccaaaatttgc
tcaaactatgtattcaatatacagccggcgaactttaaaaaggatctcgactcgtatctg
aaagcacgcgcaccagtgactttcctttctgagctacgctcgcatttgcagatctcaaat
gaacccggttcgcgttacaacattccgctcatgaatgcgcttgtgttgtatgtgggcacg
caagctatttcgcatataagaagtaaaaattttgtgcccaatacatcaaatatcgctcac
agcgcacatatggatattttccaaaatttggcagtggacttggataccgaaggtcgctat
ctcttcctcaatgctatcgccaatcagctgcgttatccgaatagtcatacgcactatttt
agctgtgcggtgctacatctcttcgccgaagccaattcggaggcgattcaagagcaaatt
acacgcgtactactcgaacgccttattgtaaatcgtccgcatccatggggtttgctgata
actttcattgagttgattaagaatcccatctataagttctgggatcatgactttgttcat
tgtgcgcccgagatttcaaggttatttgaatcggtggcacgttcatgtatggtcaaatcg
aatcatccgccgcagatgaacaatatggatggtgaaattcaggaaatcaattaa
DBGET
integrated database retrieval system
