Rhagoletis zephyria (snowberry fruit fly): 108376911
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Entry
108376911 CDS
T08513
Name
(RefSeq) transient receptor potential protein-like
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze04745
Phototransduction - fly
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09150 Organismal Systems
09157 Sensory system
04745 Phototransduction - fly
108376911
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rze04040
]
108376911
Ion channels [BR:
rze04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108376911
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
108376911
NCBI-ProteinID:
XP_017488663
LinkDB
All DBs
Position
Unknown
AA seq
1058 aa
AA seq
DB search
MPHDVKCGCDECVTSQETDSLRHSQSRINAYRALSASSLIALSSRDPVLTAFELSWELKR
LQAMESEFRAEYTEMRVGVQEFVSSLLDHARTSTELEVMLNFNHEPTTDIWMPGQRQTLE
RLKLAIRYKQKAFVAHPNVQQLLAAIWYEGLPGFRRKQASQQIIEVVKLGCMFPINSMNY
LLAPDSDAGKFMRKPFVKFISHSCSYMFFLMLLGAASLRVVDLAFELLGFPWMLAMLEDW
RKHERGSLPGPIELGIITYIASLIFGELKSLYSDGLFEYIMDLWNIVDFISNMFYVTWIL
CRATAWIIVHRDLWYRGIDPYFPREHWHPFDPMLLSEGAFAAAMVFSYLKLVHIFSINPH
LGPLQVSLGRMIIDIIKFFFIYTLVLFAFGCGLNQLLWYYAELEKNKCYHLHPDVADFDD
QEKACTIWRRFSNLFETSQSLFWASFGLVDLVSFDLAGIKSFTRFWALLMFGSYSVINII
VLLNMLIAMMSNSYQIISERADVEWKFARSQLWMSYFEDGGTVPPPFNIMPSVKLLRKTL
GKEAPKRTKSFMRKTKERAQSLHDKVMKLLIRRFVTAEQRKRDDYGITEDDIIEVRQDIS
SLRFELLDIFQTNRFNVPDIEKKTAAAAAGTKKGKVMERRILKDFQIGFVENLQHEMTVG
DEGSKDIFSSLARVIGKKKSLKSGDKDWNAIARQNTMTADPIGSKRSSIQRHSQRSLRRR
IIDQANEGLKMNQNQLIEYNPNLGEVTRATRVAYVKFMKKKMAADEEGAANAPADAESVT
STTVKDEKAAGSKKVKSDEQKAASDEKADAVSKTSTSKDGKPGDGKPAAPAPPGKPAAGA
KPTDAAKKDDVGKPAAGAAPKPAPTAAKPDATTKKDEAAKPAGAPAAGAAKPGDAAAAKP
AVAKPGESTKPEAATKKEDAGKTEAAKPGAAAGAGATAAAAKGAAPAAPAGAKPDAPAAG
GAKPADAGPATTKAAGDAAGGSGAGAAGGAGATAKTDDKKADEKKGDEKKPDDKKPDDKK
AAAPAAAKPVIKVGQSSAAAGGERGKSTVTGRMISGWL
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgccgcatgacgtaaaatgcggttgcgatgaatgtgtcacctcacaagaaaccgattca
ctgcgacattcacaatcgcgtatcaacgcttaccgcgcactttccgccagctccttaata
gcgcttagctcgcgcgatcccgtcctgacggcctttgaactctcgtgggaattaaagcgc
ctacaggcaatggaatctgaattcagagcggaatatacggaaatgcgtgtgggtgtgcaa
gaatttgtctcatctctattggatcacgcgcgcacttcaaccgaactggaggtaatgctg
aacttcaatcacgagcccacaactgatatttggatgccaggacagcgacaaactttggag
cgtctcaaattggccatacgctataagcagaaagcgtttgtggcgcatccgaatgtgcaa
caactgctggcggccatttggtatgagggactgcccggttttaggcgcaaacaagcctca
cagcagatcatagaagtggtgaagctcggctgcatgtttcccattaacagtatgaactat
ttgctagcgccagactctgatgcgggcaaattcatgagaaagccatttgtgaaattcata
tcacactcctgctcgtatatgttctttttgatgcttttgggcgcggcttcattgcgtgtg
gttgatcttgccttcgagcttttgggattcccttggatgttagccatgctggaagattgg
cgaaagcatgagcgtggttcgctgccgggtcccattgagttgggtattatcacctatatt
gccagtctaatcttcggtgaactgaaatctctttattccgatggcttattcgagtatatt
atggatctttggaatattgtcgacttcatatcaaatatgttttatgtcacgtggatattg
tgtagagcgacggcgtggattatagtgcaccgtgatttatggtatcgcggcattgatccc
tacttcccccgcgaacactggcatcctttcgatcccatgttgctatccgaaggtgcgttt
gctgccgccatggtcttctcctacttgaaattggtccatatcttctccattaatccacat
ttgggacccttgcaagtttcgttgggccgcatgataatcgacatcataaaattcttcttt
atctacactttggttttgtttgccttcggctgtggactgaaccagctgctgtggtactat
gcggaattagagaagaataaatgttatcatttgcatccggatgtggcggatttcgatgat
caggaaaaggcttgcaccatttggcgacgtttttcgaatctcttcgaaacctcacaatca
ctcttttgggcttccttcggcttagtcgatttggtatcattcgatttagctggcattaaa
agcttcacacgcttctgggctttactcatgttcggctcatactcggtgatcaatatcatt
gtgctgctcaacatgctcatcgccatgatgtccaattcatatcaaataatttcggaacgc
gcagatgttgaatggaaattcgcacgctctcagctttggatgagctatttcgaggatggt
ggcaccgtaccgccaccatttaatataatgccatcagtaaagttgctgcgtaaaacactg
ggcaaggaggcaccaaagcgcactaagagttttatgcgtaaaactaaagagcgcgcacaa
tcgttacacgacaaagtcatgaagctgctaatacggcgttttgtcaccgcagagcagcga
aaacgcgacgactatggcataaccgaggatgatatcattgaagtgcgtcaggatattagc
tctttgcgtttcgaactgctggacattttccaaaccaatcgcttcaatgtgcccgatatt
gagaagaaaacagcagctgcggcggccggcacgaagaagggtaaggtaatggaacgacgt
atacttaaagatttccaaatcggttttgttgagaatctgcaacacgaaatgaccgtagga
gatgagggtagcaaggatatcttctcatcgttggcgcgagtaattggcaagaagaagtcg
ctgaagtcgggtgacaaggattggaatgccattgcacgccaaaatacaatgactgcagat
ccgattggctcgaagcgttcgtccatacagcgacacagtcaacgcagtctgcggcgcagg
attatcgatcaggcgaacgaaggtctcaagatgaatcaaaatcagctaattgaatataat
cccaatctcggagaagtaactcgtgccacacgtgttgcttatgtcaagttcatgaagaag
aagatggctgctgatgaagaaggtgccgcgaacgcccctgcagatgctgaatccgtaaca
agtaccaccgttaaggatgaaaaagctgcaggctcaaagaaggtcaagtctgatgaacag
aaagccgctagcgatgaaaaagctgatgccgtttccaaaacttcaacttccaaagatggc
aagccgggcgatggcaaaccggccgcaccagcaccgcctggaaagcccgcagctggcgct
aaaccaaccgatgctgcaaagaaagacgatgtgggcaagcctgctgccggcgctgcgcca
aaaccagcgccaactgctgccaaacctgatgcgactacaaagaaggatgaagccgctaag
cccgcaggtgcgccggctgctggcgccgctaaaccaggtgatgcagcagccgctaagcca
gctgttgccaaacccggcgaatctacaaagcctgaagctgccacaaagaaggaggatgcg
ggaaaaactgaagctgctaagcccggcgctgcagctggcgctggtgcgaccgctgccgcc
gccaaaggtgctgcaccagctgcgccagcgggtgctaaaccagatgcgccagctgctggt
ggtgccaaaccagcagatgcaggaccggcgactacgaaggctgcaggtgatgctgccggt
ggtagtggtgctggtgctgcaggtggtgcgggagcaactgcaaaaacggacgacaaaaag
gctgatgagaagaagggtgacgaaaagaagccggatgacaagaagccggacgacaagaaa
gcagcagcgcctgcagccgccaagccggttattaaggtgggtcaaagcagtgcggcagct
ggcggtgaacgtggcaaatcgacggtcacaggtcgtatgatatctggttggctataa
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