Sphingomonas sp. AAP5: E2E30_11925
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Entry
E2E30_11925 CDS
T10507
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
saap Sphingomonas sp. AAP5
Pathway
saap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
saap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E2E30_11925 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saap03021
]
E2E30_11925 (rpoC)
03400 DNA repair and recombination proteins [BR:
saap03400
]
E2E30_11925 (rpoC)
Enzymes [BR:
saap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E2E30_11925 (rpoC)
Transcription machinery [BR:
saap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E2E30_11925 (rpoC)
DNA repair and recombination proteins [BR:
saap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E2E30_11925 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
DUF3383
Motif
Other DBs
NCBI-ProteinID:
QBM76403
LinkDB
All DBs
Position
2557630..2561922
Genome browser
AA seq
1430 aa
AA seq
DB search
MNELTNFANPVVKAETFDQIQIGIASPDKIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVIEPGITPLEKYQLMTEDELLDAQDEYGEDAFSAG
IGAEAVRIMLQDLDLEGERKELLEELAVTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMLKENEPGQGMMISDMSEVHQALEA
GAVTLHTKIISRVPQTDEKGNQYLKRYETTPGRMLLGECLPQSSKVPFDTVNRLLTKKDV
GDVIDEVYRHTGQKDTVLFADAIMSLGFKHAFKAGISFGMDDMIIPDAKIALVDETKGLV
KDFEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIKAVKHYEDGPNKGREKPINS
IYMMAHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARK
GLADTALKTANSGYLTRRLVDVSQDCVIMELDCGTTRALEMRAIVQGGSTIASLGERILG
RTTAEDIVDSKTGEVVIPSGTLLDEPMILQIEAIGTQSCKIRSPLVCETKIGVCGKCYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEALSDGTMEYRD
LRIITDQRGRRVVLSRSGEVAIMDMDGRERAVHRLPYGAYVLFDDGHIVSKGDRLAEWDP
FTMPVITENGGVVKYVDLIEGKTLTEQADEATGISQRVVTENRGIASKKEDLRPRLTLTG
ESAEESGRYMLVAGATLSVEDGAMVQGGDVLARVSRESAKTRDITGGLPRVAELFEARKP
KENAIIAKVSGRVVFGKDYKAKRKIGIQPEDGSEVVEYLVPKSKVIDVQEGDYVKRGDNL
IGGSPDPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLQKVEITDGG
DTTLLAGEQVDRDEMDEMNAKIGKKERPAQGKPVLLGITKASLQTRSFISAASFQETTRV
LTEASVQGKKDTLTGLKENVIVGRLIPAGTGAGMGRLRVTASSRDAAMRVSQRRMAEVSI
VAPNSAKEEHDAELARSTRDAGGTGDDALGAVVTSGTGTDADAGEYLNKE
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaatttcgcgaacccggtcgtcaaggccgagaccttcgaccagatc
cagatcggcatcgccagcccggacaagatccgcagctggtcgttcggcgagatcaagaag
cccgaaaccatcaactatcgcacgttcaagcccgagcgtgacggcctgttctgcgcacgc
atcttcggtccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcatgaagtat
aagggcatcgtctgcgagaagtgcggcgtcgaggtcaccgtctcgaaggttcgccgcgag
cgcatgggccatatcgagctggcagcacctgtcgcgcacatctggttcctgaagtcactg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctgtac
ttcgaagcgtatatcgtgatcgagccgggcatcaccccgctcgaaaagtatcagttgatg
accgaggacgagctcctcgacgcgcaggacgagtatggcgaagacgccttctcggccggc
atcggcgcggaagccgtgcgcatcatgctgcaggacttggatctcgagggcgagcgtaag
gagctccttgaggagcttgcggtcaccaagtccgagctcaagcccaagaagatcatcaag
cgcctcaaggtcgtcgagagcttcatcgattcgggcaaccgccccgagtggatgatcctc
gaagtcgtgccggtcatcccgcccgagctgcgtccgctggtgccgctcgacggcggccgc
ttcgcgacgtcggatctgaacgatctgtatcgccgcgtgatcaaccgcaacaaccgcctg
aagcgcctgatggagctccgcgcgccggacatcatcgtccgcaacgagaagcgcatgctg
caggaggccgtcgacgcattgttcgacaatggtcgccgcggtcgcacgatcacgggcgcc
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgattattcgggtcgttcggtcatcgtgaccggtccg
gaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgtctcgatgccaagggtctctcgatgaccctcaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctcgacgaggtgatccgcgagcat
ccggtcatgctcaaccgcgccccgacgctgcaccgtctcggcatccaggcgttcgagccc
gtgctgatcgagggcaaggcgatccagctgcacccgctcgtctgctcggcgttcaacgcc
gatttcgacggcgatcagatggcggtccacgtgccgctctcgctcgaggcgcagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggtctgtattacctctcgatgctcaaggagaat
gagccgggccagggcatgatgatttccgacatgtcggaagtccatcaggcgctcgaagcc
ggtgcggtcaccttgcacaccaagatcatcagccgcgttccgcagaccgatgaaaagggc
aaccagtacctcaagcgctatgagaccacccctggtcgcatgctgctcggcgagtgcctg
ccgcagtcgtccaaggtgccgttcgataccgtcaaccgcctcctcaccaagaaggacgtc
ggcgacgtgatcgacgaggtctatcgtcacaccggccagaaggacacggtgctgttcgcc
gacgcgatcatgagcctcggcttcaagcacgcgttcaaggccggcatctcgttcggcatg
gacgacatgatcattccggatgccaagatcgctctggtcgacgagaccaagggcctggtg
aaggactttgagcagcaatatcaggacggcctgatcacgcagcaggagaagtacaacaag
gtgatcgacgcgtggagccgttgcggcgaccaggtggcgaacgccatgatggacgagatc
aaggcggttaagcattatgaggacggccccaacaagggtcgcgagaagccgatcaactcg
atctacatgatggcccactcgggtgcgcgtggttcgcaggcgcagatcaagcagcttgcc
ggcatgcgcggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcg
aacttcaaggaaggtctgaccgtccttgaatacttcaactcgacccacggtgcgcgtaag
ggcctcgcggatacggcgttgaagacggcgaactcgggctacctcacgcgtcgtctggtc
gacgtgtcgcaggattgcgtgatcatggagctcgactgcggcacgacccgcgcgctggaa
atgcgcgcgatcgtccagggcggctcgacgatcgcgtcgctcggcgagcgcatcctcggt
cgtacgaccgcggaggacatcgtcgacagcaagaccggcgaggtcgtcatcccctcgggc
acgctgctcgacgagccgatgatcctgcagatcgaggcgatcggcacgcaatcgtgcaag
atccgctccccgctcgtctgcgagaccaagatcggcgtgtgcggcaagtgctacgggcgc
gatctcgcccgcggtacgccggtcaacatcggtgaagcggtcggcgtcatcgccgcccag
tcgatcggtgagccgggcacgcagctgacgatgcgtaccttccacatcggtggtgcggca
cagctcaacgagcagtcgaacctcgaggcgctgtcggacggtacgatggaatatcgcgac
ctgcgcatcatcaccgaccagcgcggccgtcgcgtcgtgctgtcgcggtcgggcgaagtc
gcgatcatggacatggatggccgcgagcgcgcggtgcatcgtctcccgtacggcgcctat
gtgctgttcgacgacggtcacatcgtgtcgaagggcgatcgtctggccgagtgggacccg
ttcaccatgccggtgatcaccgagaatggcggcgtcgtgaagtatgtcgatctgatcgag
ggcaagacgctcaccgagcaggccgacgaagcgaccggcatctcgcagcgggtcgtgacc
gaaaaccgcggcatcgccagcaagaaggaggatcttcgtccgcgcctgaccctcacgggt
gaaagcgccgaggaatcgggccggtacatgctggtcgcgggcgcaacgctctcggtcgag
gatggcgcgatggttcagggcggcgacgtcctggcgcgtgtcagccgcgaaagcgccaag
acgcgcgacatcaccggcggtctgccgcgtgttgccgagctgttcgaagcgcgcaagccg
aaggaaaatgcgatcatcgcaaaggtctcgggccgtgtcgtgttcggcaaggactataag
gccaagcgcaagatcggcattcagcccgaggacggcagcgaggtcgtcgagtatctggtg
cccaagtcgaaggtcatcgacgtacaggaaggcgattacgtcaagcgcggcgacaatttg
atcggtggttcgcccgatccgcacgacattctcgaagtgctcggcatcgagcccttggcc
gaatatctcgtgtcggaaatccaggaagtttaccgacttcagggcgtgaagatcaacgac
aagcacatcgagacgatcgttcgccagatgctgcagaaggtcgagatcaccgacggcggc
gacaccacgctgctcgccggcgagcaggtcgatcgcgacgagatggacgagatgaacgcc
aagatcggcaagaaggagcgtccggcgcagggcaagcccgtcctgctcggcatcaccaag
gcgtcgctgcagacccgcagcttcatctcggcggcatcgttccaggaaacgacgcgcgtg
ctcaccgaggcttcggtgcagggcaagaaggacacgctcaccggtctcaaggagaacgtg
atcgtgggtcgtctgatcccggccggcaccggtgcgggcatgggtcgcctgcgcgtcacc
gcttcgtcgcgcgatgcggcgatgcgcgtctcgcagcgtcgcatggccgaagtctcgatc
gtcgcgccgaactcggcgaaagaagagcatgacgccgagctcgcccgctcgacgcgcgat
gccggcggcacgggtgacgatgcgctcggcgcggtcgtgacgagcggcaccggcaccgat
gccgatgccggcgagtatctgaacaaggagtga
DBGET
integrated database retrieval system
