Saccharomonospora xinjiangensis: EYD13_02190
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Entry
EYD13_02190 CDS
T05928
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sacc
Saccharomonospora xinjiangensis
Pathway
sacc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sacc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EYD13_02190 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sacc03021
]
EYD13_02190 (rpoB)
03400 DNA repair and recombination proteins [BR:
sacc03400
]
EYD13_02190 (rpoB)
Enzymes [BR:
sacc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EYD13_02190 (rpoB)
Transcription machinery [BR:
sacc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EYD13_02190 (rpoB)
DNA repair and recombination proteins [BR:
sacc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EYD13_02190 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QBQ58821
LinkDB
All DBs
Position
442595..446086
Genome browser
AA seq
1163 aa
AA seq
DB search
MAVSPANQATAATNSIRSSTGVPGAPKRVSFGEIREPLDTPHLLDVQIRSFEWFTGSEAW
YERAVNEGDENPVGGLEEVLNEISPIEDFSGSMSLSFSDPRFDEVKASVEECKDKDMTYA
APLFVTAEFVNNNTGEIKSQTVFMGDFPVMTDKGTFIINGTERVVVSQLVRSPGVYFDQA
VDKSTDKDVFSVKIIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEQIRE
RFSFSETLLATLEKDHTAGQDEALLDIHRKLRPGEPPTKESAQALVENLFFKDKRYDLAK
VGRYKVNKKLGLKLPYDHGTLTEEDIVTTVEYLVRLHAGEEMMRSGDVEVPVEIDDIDHF
GNRRIRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIREFFGT
SQLSQFMDQNNPLSGLTHKRRLNALGPGGLSRERAGMDVRDVHPSHYGRMCPIETPEGPN
IGLIGSLASYARVNPFGFIETPYRKVIEGKVTDEVHYLTADEEDRFVKAQANAPLTEDGH
FAEDQVLGRRKGGEVELLDPMEIDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR
QAVPLLRSESPLVGTGVELAAAVDAGDVVVAEEAGVVEELSADMITIMQDDGTRRGYGLY
KFRRTNAGTCFNHRPIVNEGDRVEKGQVLADGPSTDKGEMALGKNLLVAVMPWEGHNYED
AIVISQRLVQDDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSEDVLADLDERGIVRIG
AEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVRVF
SREDDDELPPGVNELVRVYVAKKSKIQDGDKLAGRHGNKGVIGKILPAEDMPFLEDGTPV
DIVLNTHGVPRRMNIGQILELHLGWLASQGWKVEGNPEWAKNLTEELMDVEPGTNTATPV
FDGAREHELTGLLGCAKPNRDGDRLVGEDGKATLLDGRTGEPFPYPVAVGYMYILKLHHM
VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDV
LGRVKVYEAIVKGENMPSPGIPESFKVLLKELQSLCLNVEVLSTDGAAIEMRDSDDEDLE
RAAANLGINLSRNESPSVDDVVQ
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctctcccgcgaaccaggccactgctgcgaccaactctattcgatcgtcaacg
ggtgttccaggagcaccgaagcgagtctctttcggggagattcgcgagccgctcgacacc
ccgcaccttcttgatgtgcagatccggtcgttcgaatggttcaccggttcggaggcgtgg
tacgaacgcgccgtcaacgagggcgacgagaacccggtcggtggtctcgaggaggtcctg
aacgagatctccccgatcgaggacttctcgggctcgatgtccctgtccttctccgacccg
cgcttcgacgaggtcaaggcctccgtcgaggagtgcaaggacaaggacatgacctacgcg
gcgccgctgttcgtcaccgccgagttcgtcaacaacaacaccggtgagatcaagagccag
acggtcttcatgggcgacttccccgtgatgaccgacaagggcacgttcatcatcaacggc
accgagcgtgtcgtggtgtcgcagctcgtccgctcgcccggcgtgtacttcgaccaggcc
gtggacaagtccacggacaaggacgtcttcagcgtcaagatcattccgagccgcggtgcg
tggctcgaattcgacgtcgataagcgcgacaccgtgggtgtgcggatcgaccgcaagcga
cgtcagcccgtcacggtgctgctgaaggctctcggctggacgaccgagcagatccgcgag
cgcttctccttctccgagacgctgctcgcgaccctggagaaggaccacacggcaggccag
gacgaggcgctgctcgacatccacaggaagctgcggccgggtgagcctccgacgaaggag
agcgcgcaggccctcgtggagaacctcttcttcaaggacaagcggtacgacctggccaag
gtcggtcgctacaaggtcaacaagaagctcggtctcaagcttccctacgaccacggcacc
ctcaccgaggaagacatcgtcaccacggtcgagtacctggtccgcctgcacgcgggcgag
gagatgatgcgttccggcgacgtcgaggtgcccgtcgagatcgacgacatcgaccacttc
ggcaaccgccgcatccgcaccgtcggcgagctgatccagaaccagatcagggtcggtctc
tcccgcatggagcgcgtggtgcgcgagcggatgaccacccaggacgtcgaggccatcacg
ccgcagacgctgatcaacatccgccctgtcgtggcagcgatccgggagttcttcggaacc
tcgcagctgtcgcagttcatggaccagaacaacccgctgtcgggcctgacccacaagcgc
cgcctcaacgcgctcggccccggcggtctctcccgtgaacgcgcgggcatggacgtccgc
gacgtgcacccgagccactacggccggatgtgtccgatcgagacgccggaaggcccgaac
atcggtctgatcggctcgctcgcctcctacgccagggttaacccgttcgggtttatcgaa
acgccgtaccggaaggtcatcgagggcaaggtcaccgacgaggtgcactacctgaccgcc
gacgaggaggaccgcttcgtcaaggcgcaggccaacgcgccgctgaccgaggacggccac
ttcgcggaggatcaggtcctcggcaggaggaagggcggcgaggtcgagctgctcgacccc
atggagatcgactacatggacgtctcgcctcggcagatggtgtccgtggcgaccgccatg
atcccgttcctcgagcacgacgacgccaaccgcgcactcatgggtgccaacatgcagcgt
caggctgtgccgctgctgcgcagcgagtcgccgctggtcggtacgggcgtcgagctggca
gcagccgtcgatgcgggtgacgtcgtcgtcgccgaggaggcaggcgtcgtcgaggagctg
tccgccgacatgatcacgatcatgcaggacgacggcacccggcgcggctacggcctctac
aagttccgccgcaccaacgcgggcacctgcttcaaccaccggccgatcgtcaacgagggc
gaccgcgtcgagaagggccaggtcctcgccgacggtccctcgacggacaagggcgagatg
gccctcggcaagaacctcctcgtggcggtcatgccgtgggagggccacaactacgaggac
gccatcgtcatctcgcagcggctcgtgcaggacgacgtgctcacgtcgatccacatcgag
gagcacgagatcgacgcccgcgacaccaagctgggcgccgaggagatcacccgcgacatc
ccgaacgtgtcggaggacgtgctcgccgacctcgacgagcgcggcatcgtccgcatcggt
gccgaggttcgcgacggcgacatcctggtcggcaaggtcacgccgaagggcgagacggag
ctgacccccgaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgcgaggtgcgc
gacacgtcgctgaaggtgccgcacggcgagaccggcaaggtcatcggcgtccgggtcttc
tctcgcgaggacgacgacgagctgccccccggcgtcaacgagctcgtccgcgtctacgtc
gcgaagaagagcaagatccaggacggcgacaagctcgcgggccgtcacggcaacaagggc
gtcatcggcaagatcctccccgccgaggacatgccgttcctcgaggacggcaccccggtg
gacatcgtgctgaacacccacggtgttccgcgccgtatgaacatcgggcagatcctcgaa
ctgcacctcgggtggctcgcctcccagggctggaaggtcgagggcaaccccgagtgggcg
aagaacctcaccgaggagctgatggacgtcgagccgggcacgaacaccgcgaccccggtg
ttcgacggcgcgagggagcacgagctgacggggctgctcgggtgtgccaagcccaaccgc
gacggcgaccgcctcgtcggcgaggacggcaaggccacgctgctcgacggtcgcacgggt
gagccgttcccgtacccggtcgcggtcggctacatgtacatcctgaagctgcaccacatg
gtggacgacaagatccacgctcgttccaccggcccgtactcgatgatcacgcagcagcct
ctcggtggtaaggcgcagttcggtggtcagcgcttcggtgagatggagtgctgggccatg
caggcgtacggcgccgcctacaccctccaggagctgctcacgatcaagtccgacgacgtg
ctcggcagggtgaaggtctacgaggccatcgtcaagggcgagaacatgccgtcgccgggc
atcccggagtcgttcaaggtgctgctgaaggaacttcagtcgctgtgcttgaacgtcgag
gtgctctccaccgacggggccgccatcgagatgcgcgactccgacgacgaggacctcgaa
cgcgctgccgccaacctcggcatcaacctgtcccgcaacgagtcgccctccgtggacgac
gtcgtgcaatga
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