Sulfolobus acidocaldarius N8: SacN8_02960
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Entry
SacN8_02960 CDS
T02452
Name
(GenBank) exosome complex RNA-binding protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
sacn
Sulfolobus acidocaldarius N8
Pathway
sacn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sacn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SacN8_02960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sacn03019
]
SacN8_02960
Messenger RNA biogenesis [BR:
sacn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SacN8_02960
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
SacN8_02960
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GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF1189
Fimbrial_K88
Motif
Other DBs
NCBI-ProteinID:
AGE70570
UniProt:
M1J3W1
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All DBs
Position
complement(487046..487876)
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AA seq
276 aa
AA seq
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MSITPSNQNIVPTVKKDMILSALERGVRLDGRKPNEYRQLKVTLGYAKKAEGSALVKLGN
TLVLAGVKLEEDSPYPDTPNQGNLIVNVELLPLAYETFEPGPPDENSIELARIVDRSLRD
SKAIDLSKLVIAPGKKVWTLWVDVYVLDYDGNILDACMLASIAAIYDTKLPKVEVEGDEI
KINKEERLSIPLVNYPVVTVTTAKIGKYVVVDPNLDEESIADAKLSISYTKEGTIVGLQK
NYSGNLTFKEIDAMESTARATSQFLFEELKKQINLY
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattactccttcaaatcaaaatatagttccgaccgttaaaaaagacatgatacta
tctgcattggagaggggagttagattagacggaaggaagcctaatgagtatagacaatta
aaggtaactttgggttatgctaaaaaagctgaaggctcagcactagtaaaattaggtaac
acactagtattagcaggagttaaattagaggaagactctccttaccccgatacacccaat
caaggtaacttaattgttaacgttgagctattaccattagcctatgaaacatttgaacct
ggtccaccagatgagaattccatagagctagctagaatagttgatcgtagtttaagagat
tcaaaagctattgacctttcaaaattagttattgcgccagggaagaaagtatggacattg
tgggttgatgtatacgttcttgattatgacggaaatatactagacgcatgtatgctagct
tctatagctgcgatttatgacacaaaactccccaaagtagaagtagaaggcgacgaaata
aagataaataaggaagaaaggctaagtatacctttagttaattatcctgtagttactgtg
accacggcaaagataggcaagtacgttgtggttgatccaaatttggatgaagaaagtata
gcagatgctaagctttcaatttcatatacgaaagaaggcacaattgttggattgcagaaa
aattattctggcaatttgacatttaaagaaatagacgcaatggaaagtacagcaagagct
acatctcaatttttgttcgaagagcttaaaaagcagataaacttgtattaa
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