Shewanella aestuarii: HBH39_00720
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Entry
HBH39_00720 CDS
T06921
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
saes
Shewanella aestuarii
Pathway
saes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HBH39_00720 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saes03021
]
HBH39_00720 (rpoC)
03400 DNA repair and recombination proteins [BR:
saes03400
]
HBH39_00720 (rpoC)
Enzymes [BR:
saes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HBH39_00720 (rpoC)
Transcription machinery [BR:
saes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HBH39_00720 (rpoC)
DNA repair and recombination proteins [BR:
saes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HBH39_00720 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QIR13186
UniProt:
A0A6G9QFE1
LinkDB
All DBs
Position
PN3F2:145527..149750
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTTLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEQQIEQMREELPSINSETRRKKVTKRLKLMEAFFSSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREQAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRECINGKGEGMAFASVAEVEKAYATG
AAELHARVKVRITETHIADNGDKAKTTRIVDTTVGRALLSLILPEGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYAGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVPEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVVEDDCGVEHGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVIKPGSDEILAPRNTLLDEAWCDTLEEHSVDEVIVRSVITCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGSLKL
HNAKHVSNTDGKLVIVSRSSEIAIIDELGREKERYKVPYGTVLEKLEDSEVAAGEIIANW
DPHTHPIISEVAGSVKFVDMIDGVTMTRQTDELTGLSSVVVLDVGARTSAGKEMRPAIRL
VDANGNDLMIPGTDVPAQYFLPGNAIVSKDDNAKINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGDHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHHVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCVITAAGDSEFLEGEQVEVARVKIANRELEAQGKMPALFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDPLRGLKENVIVGRLIPAGTGYAYHKSRNEERAKGKGAA
QVETSVVTASEAEQNLADLLNLAGSQD
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttcttaaacagcaaagcaagactgaagaatttaacggtatt
aaaattggtttggcatcgcctgacctaatccgttcttggtcttttggtgaagttaaaaag
ccagaaaccattaactaccgtacattcaagcctgagcgtgaaggtttgttctgtgcgcgt
atctttggtccagtaaaagattacgaatgtttgtgtggtaaatacaaacgtcttaagcac
cgtggtgttatttgtgaaaagtgtggcgtagaagttacccagactaaagtgcgtcgtgag
cgcatgggtcacattgaactggctagcccagttgcccacatttggttcttaaaatcactt
ccgtctcgtatcggcttaatgcttgatatgactttacgtgatattgagcgcgtattgtac
tttgaatcatttgttgttatcgagcctggcatgaccacgcttgagcgcggccaaatgctt
actgaagaaacgtatttagatgcgttagaagagtacggtgatgagtttgaagctaagatg
ggtgctgaggcagttttagaattgctacgtgctatcgatcttgagcaacaaattgagcaa
atgcgcgaagagctaccatcaatcaattcagaaacgcgtcgtaagaaagtgactaagcgc
ctgaaattgatggaagcattcttctcatctggcaacaagccagagtggatgatcttaaaa
gtattaccggttctgccacctgatctacgtccattagtgccgttagatggtggtcgtttc
gcgacatcggatcttaacgatctatatcgtcgcgtgatcaaccgtaacaaccgtttgaag
cgtctattagaccttgctgcaccagatattatcgtacgtaacgaaaagcgtatgttacaa
gaatctgttgatgcattattagataacggtcgtcgtggtcgtgctatcactggttctaac
aagcgtccacttaagtctttggctgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgttgattactcaggtcgttcggtaattaccgtaggtcctacg
ttgcgtttgcatcagtgtggtcttcctaagaagatggcacttgagctattcaaaccattc
atttatggcaagttagaaggccgtggtttagcgactacgatcaaagcagctaagaaaatg
gttgagcgtgaacaggctgaagtatgggatgtgttagacgaagtaattcgtgagcatccg
gtcatgcttaaccgtgcaccaacacttcatagactaggtattcaagcatttgagccagtt
ctaattgaaggtaaagcaattcaattgcatccgttagtatgtgctgcgtacaacgctgac
ttcgacggtgaccaaatggcggtacacgtaccattaacgctagaggctcagttagaagct
cgtgcgctaatgatgtctaccaacaacattttgtcacctgctaacggtgagccagttatt
actccgtctcaggacgttgtattaggtttgtactacaccagccgtgaatgcattaacggt
aaaggtgaaggcatggcttttgcttcagttgctgaagtagaaaaagcttatgctactggt
gctgctgaattacatgctcgtgtaaaagttcgtattacagaaacgcatattgctgacaat
ggtgacaaagccaaaactacacgtattgtagacactacagtcggccgtgcattgttatct
ttgattctgccagaaggcttatcatatgatttggttaaccaaaacatgggtaagaagcag
atttctaagttactcaatacctgttatcgccaactaggtcttaaagacactgtaattttt
gctgaccaattaatgtatgccggtttccgttttgcaaccatttctggtgcctctgtaggt
atcgatgacatggttattccggacgagaaatacaccttagtggctgacgctgaagctgaa
gtgcttgaaattcaagagcaattccaatctggtcttgttactgctggtgagcgttacaac
aaggttatcgatatctgggcatcagcaaacgaaaaagtttctaaagctatgatggaaaac
ctgtctactgagacagtgattaaccgtgatggtgttcctgagaaacaagcatcgtttaac
agcatctatatgatggccgactcgggcgctcgtggtagtgctgctcagatccgtcagtta
gcgggtatgcgtggtctgatggctaagccagatggctcgatcatcgaaacaccgattgtc
gcgaacttccgtgaaggtctaaacgtacttcagtactttatttcaactcacggtgcgcgt
aaaggtcttgccgatacagcattgaagacagctaactctggttacctaacacgtcgactt
gttgatgttgcccaagacttagtagttgttgaagacgactgtggcgttgagcatggttta
acaatgaagccgctaattgaaggtggtgatgttgttgagccgttacgtgaacgcgtatta
ggtcgtgttgttgctgttgatgttatcaagccaggctctgatgaaatcttagcaccacgt
aatactttattagatgaagcatggtgtgacacgttagaagagcacagtgttgatgaggtt
atcgttcgtagcgtaattacctgcgatactgactttggtgtttgtgcggcatgttatggt
cgtgatcttgcacgtggtcatattatcaaccatggtgaagcgattggtgttgttgcggca
caatcaattggtgagccaggtacacagcttaccatgcgtactttccacattggtggtgcg
gcgtctcgtgcgtcagcagagaacaacgttcaagttaagaacgcgggttctttaaaacta
cacaatgcgaaacatgtttcaaataccgacggtaagctggttattgtttctcgttcttct
gaaattgccatcattgatgagctagggcgtgagaaagaacgctacaaggtaccttatggt
actgtgttagaaaaattggaagacagtgaagttgcagctggcgaaatcatcgctaactgg
gatccacatactcacccaattatttctgaagttgcgggtagcgttaagtttgttgacatg
attgacggtgttaccatgacacgtcaaacagacgaattaacaggtctttcttctgttgtt
gtacttgacgtaggtgcacgtacatcagctggtaaagaaatgcgtcctgctattcgctta
gtagatgctaacggtaatgacttaatgatcccaggtactgatgtaccggctcaatacttc
ttaccgggtaatgcgattgtttctaaagacgataacgctaaaattaacgttggtgacgca
ttagcacgtattccacaagaatcgtctaaaacacgtgacatcaccggtggtcttccacga
gttgctgacttgttcgaagcgcgtaaaccaaaagagcctgcaattcttgcagaaatttct
ggtacgatttcgttcggtaaagaaactaagggtaaacgtcgcctagtgattacaccagct
gatggtggcgatcactatgaagagatgatccctaagtggcgtaacttaaacgtgttcgaa
ggtgaaaaagttgaacgcggtgaagttattgctgacggtccagaagctgcgcatgacatt
ctacgtcttcgcggtatccaccatgtagccaattacatcgtgaacgaagttcaagatgta
taccgtctacagggtgtaaagatcaacgataagcatatcgaagtgatcatccgtcaaatg
ctacgtaaatgtgtcattacagccgctggtgacagtgaattcttagaaggcgaacaggta
gaagttgcacgcgttaagatcgctaaccgcgaacttgaagcgcaaggcaaaatgcctgca
ttgtttgagcgtgaattattaggtattactaaagcttctttagctaccgaatcattcatc
tctgctgcttctttccaagaaacaacacgtgtacttactgaggctgctgttggcggtaag
agcgatccattacgtggtcttaaagaaaacgtaatcgtaggtcgtttgatcccagctggt
actggttatgcgtatcacaaatctcgcaacgaagagcgtgctaaaggtaaaggcgctgct
caagttgagacttcagtggtaaccgctagcgaagcggaacaaaacctagcagacttgtta
aatttggctggtagccaagattaa
DBGET
integrated database retrieval system
