Simiduia agarivorans: M5M_10285
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Entry
M5M_10285 CDS
T02281
Name
(GenBank) Pectate lyase-like protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
saga
Simiduia agarivorans
Pathway
saga00040
Pentose and glucuronate interconversions
saga01100
Metabolic pathways
saga02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
M5M_10285
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
M5M_10285
Enzymes [BR:
saga01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
M5M_10285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
CBM_6
CBM_35
CBM_35_2
F5_F8_type_C
Motif
Other DBs
NCBI-ProteinID:
AFU99238
UniProt:
K4KMD3
LinkDB
All DBs
Position
2275959..2279600
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AA seq
1213 aa
AA seq
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MKRLSQTMLAASIAVAGLAALPQAHAAVQGYATLNGGTTGGAGGAVVYASTGAEINAAMC
NRASDDTPLTIYVTGTINHANTTKYSGSCDTTAEEIQFKGVKNISLIGVGNAAVFDQIGI
HLRDTSNIVLQNLHIKNVKKSGSPTSNGGDAIGMESGVYNVWVDHCTLEASGGESDGYDS
LLDMKATTQYVTVSYTHYRNSGRGGLMGSSDSDDTNTFVTFHHNYYENMDSRLPLLRHGT
AHAYNNYYNGIIKSGLNPRIGGKIKVDNNYFENAHNPLGTFYTTDMGYWDVSGNYFDPDT
VVWEQSDSDKWFPAGPNPVSTTSISIPYSYTLDQVHCVPQIVTSTVGAGTGMLESDGSCS
VTPTPTPAPTPTPTPTPAPTPTPVPTPTPTPAPTPTGENLSIGAGSDGSSKASGTSYGNV
RDGDLSTYWAPSGSTGRVSVKWSSDTTISSVIIREAAGFEGNIGSWQLVNNDNGTVLATG
SGAGAINFSSTSLSKVNFEILSSSGLATVAEFETYAGSAAPAPTPTPTPTPTPTPTPTPT
PVPDTTFTVQENAAGFCAVEGAVENEHAGYNGSGYANTTNATDAGIDYEIYAPQAGYYEL
NVRYANGASDRPARILVNGQQQGNLGFSSTGSWSSWSDAGNLVLALNGGEQSLRIEAETS
GGLANIDQVSITGLAPAAGDCAPGDSTNGGTPVEPEPTEPDPVDPSDPTEPTDPTDPVDP
TDPSEPTDPSDPTDPGNGGIPPIGDGGDPACSELLTNPNMNWRESPSLTTDQEIVHCLAT
SLGRPVGFGSNATGGYDPLGNSNLVVITQGGSVSPEQQILNAISTPDYNWIVFDKDDFAN
RTELGMYRVGCDDADVLSALGGASPAECRDPQLWCSNHGVSSASCLETFFNDRLNDSSLN
ALKNKLIESNTTIDGRGTNATFIFSGFKIGADSSGASTHQSRNVIITNNRFEGVGHTEDH
NLDPDMIRSTGESHDIWIHQNTFDTTGDSAFDVKVGAYNLTISFNKLVNVKRAALHGSSD
SRTINEQITSTMHNNLFITTDDKFGDNAYNTLRRVPLIRRGQSHMFNNVFYGYRKDLLSV
RVGGRVLFEDNMFLNNVNNSKGDDLNDWVETLLRDFREGGLEIKRSFVWYADDQCQAQGS
PGDLTASHGSTPNMFSAYDGSSQNTINAYRFAAGSDLANYAFATAGKGGHTPYVSGYAAD
TASIIAAAPSGCQ
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcctttcccagacaatgcttgcagcatccattgcggttgcgggcctggcggca
ttgccgcaggctcacgccgcagtacagggttacgccaccctcaatggcggcaccaccggt
ggtgccggtggtgcggtggtgtacgccagcaccggcgccgaaattaatgccgccatgtgc
aaccgcgccagcgatgacacgccgttgaccatctacgtgaccggcaccatcaaccacgcc
aacaccaccaagtattccggcagttgcgataccaccgccgaagaaatccagttcaaaggc
gtgaaaaatatttcactcattggcgtaggcaatgccgccgtattcgaccagatcggcatt
catctgcgcgacacgtccaacatcgtgctgcaaaacctgcacatcaaaaacgtgaaaaaa
tccggctcacctacgtcgaacggtggcgacgctatcggcatggaatccggcgtgtataac
gtctgggttgaccactgtacgctggaagcctccggcggcgaaagcgatggctatgattcg
ctgctggacatgaaggcgaccacacaatacgtgaccgtgtcctacacccactaccgcaat
tccggccgcggtggactcatgggctccagcgacagtgacgacaccaataccttcgtcacc
ttccatcacaactattacgaaaacatggactcgcgtttgccgctgctgcgccacggtacc
gcccatgcttacaacaactattacaacggcatcatcaagtccggcctgaacccgcgcatt
ggcggcaagatcaaagtggacaacaattactttgaaaacgcccacaacccgctcggcact
ttctacaccaccgacatgggctattgggacgtgagcggcaactactttgatcccgacacc
gtagtctgggagcaaagcgattcggacaagtggttccccgccggccccaatccggtgtcg
accaccagcatcagcatcccctacagctacacgctggatcaggtccactgtgtaccgcag
attgtgacctccaccgtgggtgccggcaccggcatgctggaatccgatggcagctgttcg
gtcacgcccactccgaccccggcgccaacaccaacgcccactccgaccccggcgccaaca
ccaacgccggttcctaccccgacaccaacaccagcgccaacgcccaccggtgaaaacctg
agcatcggtgccggctcagacggttccagcaaagccagcggcaccagctacggcaatgtg
cgcgacggcgatctcagcacttactgggcaccgagcggcagcaccggccgcgtgtccgtg
aaatggagcagcgacaccaccatcagcagcgtgatcatccgcgaagccgccggctttgaa
ggcaacatcggcagctggcagctggtcaacaatgataacggcacagtattggctaccggc
tcgggtgcaggtgccattaatttttccagcaccagcctcagcaaagtcaactttgaaatt
ctgagcagcagcggcctggctacagtggcggaatttgaaacttatgccggctcagctgca
ccagccccaacgccgaccccaacgccgaccccaacgcctactccaaccccgacgccaacg
ccggtaccggataccacctttaccgtgcaggaaaacgcagccggtttctgtgccgttgaa
ggtgccgtggaaaacgagcacgcgggttacaacggcagcggttacgccaacaccaccaat
gccaccgacgccggcattgattacgaaatctatgcgccgcaagcgggttactatgaactc
aatgtgcgctacgccaatggcgccagcgaccgacctgcgcggattctggttaacggccag
caacagggcaaccttggcttttccagtaccggtagctggagcagctggtccgacgccggc
aatctggtactggcactgaacggcggcgaacaaagcctgcgcatcgaagccgaaaccagt
ggcggtctggccaacattgatcaggtcagcattaccggtctggcaccggcggcgggcgat
tgcgcaccgggcgacagcaccaacggcggaacgccggttgagcccgagcctaccgagccc
gaccctgtagacccctccgatccaacagaacccaccgatcccaccgacccggttgatccc
actgacccgtcggaacccactgatcccagcgacccaaccgatccgggcaacggcggcatt
ccacccattggcgatggcggtgatccggcttgctcggaattgctgaccaatcccaacatg
aactggcgcgagtcgcccagcctcaccaccgaccaggaaatcgttcactgcctggccacc
tcactcggtcgcccggtgggctttggcagcaatgccactggtggttatgacccactcggc
aacagcaatctggtggtcatcacccagggcggcagcgtttcacccgagcagcaaatcctg
aacgccatcagcacgcccgattacaactggatcgtgttcgacaaggatgactttgccaat
cgcaccgaactgggcatgtaccgggtaggctgtgatgacgccgatgtcctgtctgccttg
ggcggcgccagtccggcggagtgccgcgacccgcaactctggtgcagcaatcacggcgta
tcctctgccagctgtctggaaacctttttcaatgaccggttaaacgacagcagcctgaac
gcactgaaaaataaactgattgagtccaacaccaccatcgatggtcgcggcaccaatgcc
acgtttattttcagcgggtttaaaatcggggcggattccagcggtgccagcacgcaccaa
agccgcaatgtgatcatcaccaacaaccggtttgaaggcgtgggtcacacggaagaccac
aatctcgacccggatatgatccgctccactggcgaatcacacgacatctggattcaccag
aacaccttcgacaccacgggcgattccgcttttgatgtaaaagtcggtgcctacaatctc
accatttccttcaacaaactggtcaatgtgaaacgcgcggcactgcacggttccagtgat
agcagaaccattaacgaacagattaccagcaccatgcacaacaacctgttcatcaccacc
gacgacaagtttggcgacaacgcgtacaacaccttgcgtcgcgtgccgttgatccggcgc
ggtcagtcacacatgttcaacaatgtgttttatggttatcgcaaagacctactgagcgtg
cgtgtgggtggccgggtgctgtttgaggacaatatgttcctgaacaacgtcaataacagc
aaaggcgatgatctgaacgattgggtagaaaccctgctgcgcgatttccgcgaaggcgga
ctggaaatcaaacgcagctttgtgtggtatgccgatgaccagtgccaggcgcaaggcagc
cccggagacctgaccgcctctcatggcagcacgcccaatatgttcagcgcctacgatggc
agttcgcagaacaccatcaatgcctaccggttcgccgcagggtccgatctggccaattac
gcctttgccaccgcgggcaagggtggccataccccttacgtcagcggctacgccgccgac
acggccagcatcattgcggccgccccctcgggctgccagtaa
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