Silicimonas algicola: EF888_20335
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Entry
EF888_20335 CDS
T05779
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
salo
Silicimonas algicola
Pathway
salo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EF888_20335 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salo03021
]
EF888_20335 (rpoB)
03400 DNA repair and recombination proteins [BR:
salo03400
]
EF888_20335 (rpoB)
Enzymes [BR:
salo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EF888_20335 (rpoB)
Transcription machinery [BR:
salo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EF888_20335 (rpoB)
DNA repair and recombination proteins [BR:
salo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EF888_20335 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AZQ69279
UniProt:
A0A316G645
LinkDB
All DBs
Position
complement(4100414..4104571)
Genome browser
AA seq
1385 aa
AA seq
DB search
MATSYLGQKRYRKYFGKIREVLEMPNLIEVQKSSYDLFLNSGDQSDPQDGEGIKGVFQSV
FPIKDFNETAVLEFVKYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAC
RIIPYRGSWLDFEFDAKDSVFARIDRRRKLPVTTLLYALGMDQEAIMDAYYNTVDFKLKK
NKGWVTKFFPERVRGTRPTYDLVDAKTGEVIAEAGKKVTPRAVKQMIEEGSISELLVPFD
NIVGRYVAKDMVNEENGAIYAEAGDELTWLTDKEGNVTGGTLKDLMDADVTDIPVLDIDN
INVGPYIRNTMAADKNMNRDTALMDIYRVMRPGEPPTVDAASALFDTLFFDSERYDLSAV
GRVKMNMRLDLDAPDTHRTLRKEDIVSCIKALVELRDGKGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRRVKDSTVTDDVVYMSATEEMRHVVAQANAKLDSKGRFENEMVNTRQAG
EYTLTPTEQVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAPLI
GTGIEEKVAIDSGAAIQARRAGVVDQVDAQRIVIRATESLEPGDPGVDIYRLRKFQRSNQ
NTCINQRPLVKVGDTVTRGEVVADGPSTELGELALGKNVIVAFMPWNGYNYEDSILISER
IVRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDFGTIVEVRVFNRHGVEK
DERALQIEREEVERLSRDRADELAILERNIYGRLKDMLMGKVAVKGPKQIKPKSMIDDDL
LETLSRGQWWQLAIGEEKEAQAIEALNAQYEAQKRALDHRFEDKVEKVRRGDDLPPGVMK
MVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPIEDMPFLGDGTPVDFVLNPLGVPSRMN
VGQILETHMGWASRGLGIQIDEALGQYRRSGDMTPVRDALKIAYGDDVYDEGIKDLDEVH
LVEVASNATRGVPIATPVFDGAKEADVNEALVKAGFNQSGQSDLFDGRTGEKFSRQVTVG
VKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAVDDDES
GIAAE
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtcctatctcggccagaaacgctaccgcaaatacttcggcaagatccgcgaa
gtcctggagatgccgaacctcatcgaggttcagaaatcctcgtacgacctgttcctgaac
tcgggcgaccagtccgatccgcaggacggcgaaggcatcaagggtgtcttccagtcggtc
ttcccgatcaaggacttcaacgagaccgcggtgctggagttcgtcaagtacgagctcgag
aagccgaagtacgacgtcgaggaatgccagcagcgcgacatgacctattcggcgccgctg
aaggtgacgctgcgcctgatcgtgttcgatgtggacgaggataccggcgcgaagtcggtc
aaggacatcaaggaacaggacgtcttcatgggcgacatgcccctgatgacgccgaacggg
acgttcatcgtgaacggcaccgagcgcgtgatcgtgtcccagatgcaccgctcgccgggc
gtgttcttcgaccatgacaagggcaagacccacgcgtcgggcaagctgctcttcgcctgc
cgcatcattccctatcgcggctcgtggctcgacttcgagttcgacgccaaggacagcgtc
ttcgcgcggatcgaccgccgccggaagctgcccgtgacgaccctgctctatgccctcggc
atggaccaggaggcgatcatggacgcctactacaacaccgtcgatttcaagctgaagaag
aacaagggctgggttaccaagttcttccccgagcgcgtccgcggcacccggccgacgtac
gacctcgtcgacgcgaagacgggcgaagtgatcgccgaggcgggcaagaaggtcacgccg
cgcgccgtcaagcaaatgatcgaagagggtagcatctcggagctgctcgtgccgttcgac
aacatcgtcggtcgctacgtcgcgaaggacatggtcaatgaagagaatggcgcgatctat
gccgaagcgggcgacgagctgacttggctgaccgacaaggaaggcaacgtcaccggcgga
actctgaaggatctgatggatgccgacgtgaccgacatcccggttctcgacatcgacaac
atcaacgtgggtccgtacatccgcaacacgatggccgcggacaagaacatgaaccgcgac
accgcgctcatggacatctatcgcgtgatgcgtccgggcgagccgcccacggtcgacgcc
gcgtcggccctgttcgacacgctgttcttcgattccgagcgctatgacctttcggctgtc
ggccgcgtgaagatgaacatgcgcctcgacctcgatgcgccggacacccaccgaaccctg
cgcaaggaagacatcgtctcgtgcatcaaggcgctggtggagctgcgcgacggcaagggc
gacatcgacgacatcgaccacctcggcaaccgccgcgtccggtcggtcggcgagctgatg
gagaaccagtaccgcgtcggccttctgcggatggagcgcgcgatcaaggagcgcatgtcg
tcggtcgagatcgacaccgtcatgccgcaggacctgatcaacgccaagcccgccgcggcc
gcggtgcgcgagttcttcggctcatcgcagctgtcgcagttcatggaccagaccaacccg
ctgtcggaagtcacccacaagcgccgtctctcggcccttggaccgggcggtctgacgcgg
gagcgtgcgggcttcgaggtccgcgacgttcacccgacgcactatggccggatgtgcccg
atcgagacgccggaaggcccgaacatcggtctcatcaactcgctggcgaccttcgcccgc
gtgaacaagtacggcttcatcgagacgccctatcgccgcgtgaaggattcgaccgtcacc
gacgacgtggtctacatgtcggcgacggaagaaatgcgtcacgtcgtggcgcaggcgaac
gcgaagctcgacagcaagggccggttcgagaacgagatggtgaacacccgccaggcgggc
gagtacacgctgacgccgaccgagcaggtcgacctcatcgacgtctcgccgaagcagctc
gtgtcggtcgcggcttcgctgatcccgttcctcgagaacgacgacgcgaaccgcgcgctg
atggggtcgaacatgcagcgacaggccgtgcctcttcttcaggccgaagccccgctgatc
ggcaccggcatcgaagagaaggtcgccatcgactcgggcgccgccatccaggcgcgccgt
gcgggcgtcgtcgaccaggtcgatgcgcagcgtatcgtcatccgagccaccgaaagcctc
gagccgggcgatccgggcgtcgacatctatcgtctgcgcaagttccagcggtcgaaccag
aacacctgcatcaaccagcgtccgctggtgaaggtcggtgacactgtcacccgcggcgaa
gtcgtcgctgacggcccgtcgaccgagttgggcgagctggccctgggcaagaacgtgatc
gtcgccttcatgccgtggaacggctacaactacgaggactcgatccttatctccgagcgc
atcgtgcgcgacgacgtcttcacctcgatccacatcgaggaattcgaagtcgccgcccgc
gacaccaagctcgggccggaagagatcacccgcgacatcccgaacgttggcgaggaagcg
cttcgcaacctcgacgaggccggcatcgtctatatcggcgccgaagtggggccgggcgac
atcctcgtcggtaagatcacgcccaagggcgaaagcccgatgacgccggaagagaagctt
ctgcgcgccatcttcggcgaaaaggcctcggacgtgcgcgacacgtcgctgcgcctgccg
ccgggcgacttcggcaccatcgtcgaggttcgggtcttcaaccgccacggcgtcgagaaa
gacgagcgcgcgcttcagatcgagcgtgaggaagtcgagcgcctgtcgcgcgaccgggcc
gacgagctggcgatcctcgagcgcaacatctacgggcgccttaaggacatgctgatgggc
aaggtcgccgttaaggggccgaagcagatcaagccgaagtccatgatcgacgatgatctg
ctggagacgctttcgcgtggccagtggtggcagcttgccatcggcgaagagaaagaggcc
caggcgatcgaggcgctgaacgcgcagtacgaggcgcagaagcgcgctctcgatcaccgc
ttcgaggacaaggtcgagaaggtccgccgcggcgacgacctgcccccgggcgtgatgaag
atggtcaaggtcttcgtcgcggtgaagcgcaagcttcagccgggcgacaagatggccgga
cgtcacggcaacaagggcgtcatctcgaaggttgtcccgatcgaagacatgccgttcctc
ggcgatggcactccggtcgacttcgttctcaacccgctcggcgtgccgtcgcggatgaac
gtgggccagatcctcgagacgcacatgggctgggcctcgcgcggtctgggtatccagatc
gacgaagcccttgggcaataccgccggtcgggcgacatgaccccggtccgtgacgcgctc
aagatcgcctatggcgacgacgtctacgatgagggcatcaaggatctggacgaggttcat
ctcgtcgaggtcgcctcgaacgccacccgtggcgttccgatcgcgaccccggtcttcgat
ggcgccaaggaagccgacgtcaacgaggcgctggtcaaggcgggcttcaaccagtcgggc
cagtccgacctgttcgacggacgcacgggcgagaagttctcgcgccaggtaaccgtcggc
gtgaagtacctgctgaagctgcaccaccttgtcgacgacaagatccacgcacgttccacc
gggccctatagcctcgtcacgcagcagcccctgggcggcaaggcccagttcggcggccag
cgtttcggcgagatggaggtctgggcgctggaagcctacggcgcggcctacacgctgcag
gagatgctcaccgtcaagtcggacgacgtggcaggccggaccaaggtctacgagtcgatc
gtcaagggcgaggacaacttcgaagccggcgtgccggagtcgttcaacgttcttgtcaag
gaagtccggggcctcggcctcaacatggaacttctggatgccgtggacgacgacgagagc
gggattgcagccgagtga
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integrated database retrieval system
