Salvelinus sp. IW2-2015 (Arctic char): 111949821
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Entry
111949821 CDS
T05762
Name
(RefSeq) short transient receptor potential channel 4-like
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
salp04040
]
111949821
Ion channels [BR:
salp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
111949821
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Egg_lysin
YVC1_C
PKD_channel
CCDC22_CC
BAR_4
Motif
Other DBs
NCBI-GeneID:
111949821
NCBI-ProteinID:
XP_023822928
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Position
LG22:complement(20024065..20049076)
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AA seq
765 aa
AA seq
DB search
MSRLYYRRTDNSSYRDRIALRIVRAESELSGLEKNYLGAVEKGDYASVKQALEEAEIYFR
ININCIDPLGRTALLIAIENENLEIIELLLSYNVYIGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPILLDKQFSNFTPDITPIILAAHTNNYEIIKLLVQKGVSMPQPHEVRCNCME
CVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSE
YEELSQQCKQFAKDLLDQTRSSRELELILNYRDDINPLLDENTNDLARLKLAIKYTQKEF
VAPANCQAALRLVGYDGSLDEACHGFIWTEIKQMWDGGFQDYIHDWWNLMDFVMNALYLA
TISLKIVAYVKYSGFRARNEWQMWHPTLVAEAVFAIANIFSSLRLISLFTANSHLGPLQI
SLGRMLLDILKFLFIYCLVLLAFANGLNQLYFYYETDEGLKGCKDIEWKFARTKLWMSYF
EEGGTLPSPFNIIPSPKSIWYFICWIRKHIFKITRAKKTETFGTIGRRAAINVRINHQYQ
EVLRNLVKRYVAAMIRDAKTEEGLTEENFKELKQDISSFRYEVLGMMKGKVGPEGGGVAL
AGSKPSEEAGASILVYPDHSFKYSPKFSPATPKTNMFPDTTSILQQRAAPSSTSSSTSPS
TSQGLNRLVNGSVVPSWASTDTSSNPTSSTPISSSSSTPIHASTKDMLSRKNFPKDICDF
GLYSVSEEMGEADLEVLDCDGEKEEQGGARERTCTEKEENEGRGE
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgactgtactacaggaggacagacaactcctcctacagggaccggatcgctctg
aggattgtcagggccgagtctgaactgtctggcctggagaagaactacctgggagcagtg
gagaaaggagactacgcctcagtcaaacaggctctagaggaggcagagatctacttccgg
atcaacattaactgtatagacccgttgggccgcacagctctgctgatcgctattgagaat
gagaacctggagattatagagctgttgctcagctataacgtgtacatcggtgacgctctg
ctacacgccatccgtaaagaggtggtgggggccgtggaattgctgctcaaccacaagaag
cccagcggggagaaacaggttcctcccatcctattggacaagcagttctctaactttact
cctgacatcacacccatcatcctggcagctcacaccaacaactatgagatcatcaaactg
ctggtgcagaagggggtgtccatgccccagccacatgaggtgcgctgtaactgcatggag
tgcgtgtccagctctgatgtggatagtcttcgtcactcccgctctcgtctcaacatctac
aaggccttggccagcccatcactcatagccctctccagtgaagaccctttcctcacagcc
ttccagctctcctgggaactacaggaactcagtaaggtagagaatgagtttaagtcggag
tatgaggaactatctcagcagtgtaaacagtttgccaaggacctgttggaccaaaccagg
agctccagagaactagagctgatcctgaactacagagacgacatcaaccctctactggat
gagaacaccaatgacctggccagactcaaactggctatcaaatacacacagaaagagttt
gtagcgccagccaactgtcaagctgccttgcgtctcgttggttacgatggttccctggat
gaggcgtgtcatggcttcatctggacagagattaaacagatgtgggatggagggttccag
gactatatccatgactggtggaacctcatggactttgttatgaacgctctgtacctggct
accatttctctgaagatcgttgcctatgtcaagtacagtggcttcagggccaggaacgaa
tggcagatgtggcatcctaccttggtagcagaggctgtgtttgccatcgctaacatcttc
agctccctccgcctcatctctctgtttacagctaactcccacctgggacctctacagatc
tctctgggcaggatgctgctggacatccttaagttcctgtttatctactgcctggtgctc
ctggccttcgctaacgggctcaaccagctctacttctactacgagacagacgagggactg
aagggatgcaaggacattgagtggaagtttgcaagaaccaagttgtggatgagttacttt
gaagagggggggactctgccttctccattcaacatcatccctagccccaagtcaatctgg
tacttcatctgctggatcaggaaacacatcttcaagatcaccagggccaagaaaacagaa
acatttggaaccatagggagacgggctgctataaacgtaagaataaaccaccagtatcag
gaggttttgaggaacctggtgaagagatatgtagcagccatgatcagagatgccaagaca
gaggaaggactgactgaggagaactttaaggagctgaagcaggacatctccagctttagg
tatgaggtcctggggatgatgaaggggaaggtggggcccgagggtgggggcgtggctcta
gcaggaagtaaacccagtgaagaggcaggggcctccattttggtctaccctgaccactcc
ttcaagtactcccccaagttctccccagccacgcctaagaccaacatgtttcccgacacc
acatccatactccagcagagggcagccccctcctccacctcctcctccacatccccttcc
acctctcagggcttgaaccgactggtcaacggctctgtggtaccctcttgggcctccact
gacacctcctccaaccccacctcctccactcccatctcctcttcctcctccactcccatc
catgcctccaccaaagacatgctgtccaggaaaaactttcccaaagacatctgtgacttt
gggctctactctgtgtctgaggagatgggagaggctgacctggaggtgctggactgtgat
ggagagaaggaggagcagggtggagcgagggagaggacgtgtacagagaaggaagagaac
gaagggaggggagagtga
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