Salvelinus sp. IW2-2015 (Arctic char): 111955014
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Entry
111955014 CDS
T05762
Name
(RefSeq) thyroid hormone receptor beta isoform X1
KO
K08362
thyroid hormone receptor beta
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
111955014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111955014
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
salp03310
]
111955014
Transcription factors [BR:
salp03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
111955014
Nuclear receptors [BR:
salp03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
111955014
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GFIT
Motif
Pfam:
zf-C4
Hormone_recep
PAP_central
CpXC
Motif
Other DBs
NCBI-GeneID:
111955014
NCBI-ProteinID:
XP_023830798
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Position
LG30:9581276..9685323
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AA seq
416 aa
AA seq
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MSEQGDKCTTPRWKHEALQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRT
IQKNLNPTYACKYEAKCIIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEE
NRERRRKEELQKTVWDRPEPSQEEWDLIRMVTEAHMSTNAQGNHWKQKRKFLVEEAMLLN
EITCNLFYTSDQSAVGVKETKPEDIGQAPVINAPEGSKVDIEAFSQFTKIITPAITRVVD
FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGG
LGVVSDAIFDLGLSLSSFHLDDSEVALLQAVILLSSDRPGLTSVERIERCQEEFLLAFEH
YINYRKHKVAQFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPPLFLEVFED
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcaaggagacaaatgcaccaccccccgctggaaacatgaggccttgcaaaat
gggtacatccctagttacctggacaaggacgagttatgtgtggtatgtggggacaaagct
acaggatatcactatcgctgtatcacctgtgaaggatgcaagggtttcttccggcggacg
atccagaagaacctgaacccaacgtacgcatgtaagtacgaggcgaagtgcatcatcgat
aaggtgaccaggaaccagtgccaggaatgtcgcttcaagaagtgcatcgctgtcggcatg
gcaacagacttggtgctggatgacagcaagcggctcgccaagcggaagttgatcgaggag
aaccgtgagcggcggcggaaggaggagctccagaagacggtgtgggaccggcctgagccg
tcccaggaggagtgggacctgatccgcatggtcaccgaggcccacatgtcaactaacgcc
cagggaaaccactggaaacagaaacgcaagttcttggtcgaggaagcaatgctacttaat
gaaataacatgtaatttattctatacttctgaccagagtgcagtgggggtgaaggaaacc
aagcccgaggacattggtcaagcgccggtcataaatgcacctgaagggagcaaagtggac
atagaagccttcagtcagtttacaaaaattatcacccccgccattacccgagtggtggac
tttgccaaaaagctgcctatgttctgtgagctgccttgtgaagaccagattatcctattg
aaaggctgctgcatggagatcatgtctttacgggcggccgttcgctacgaccccgagagt
gagacgctgacgcttaacggagagatggccgtgacccgcggccagctgaagaacggaggc
ctgggtgtggtgtcggacgctatctttgatttgggcttatcgctgtcttcgttccacctg
gacgactctgaggtcgctctgctacaggccgtcatcctcctgtcctccgaccgtccaggg
ctgaccagcgtggagcgtattgagcgctgtcaggaggagttccttctggcctttgaacat
tacatcaactaccgcaaacacaaggtggcgcaattctggcccaagctgctgatgaaggtg
acggacctgcggatgatcggggcgtgccacgcctcccgcttcctgcatatgaaggtggag
tgccccaacgaacttttccccccactcttcctagaggtctttgaggactga
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