Salvelinus sp. IW2-2015 (Arctic char): 111961882
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Entry
111961882 CDS
T05762
Symbol
nup188
Name
(RefSeq) nucleoporin NUP188 homolog isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111961882 (nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111961882 (nup188)
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111961882 (nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Nup192
Motif
Other DBs
NCBI-GeneID:
111961882
NCBI-ProteinID:
XP_023840274
LinkDB
All DBs
Position
LG4q.1:29:34109651..34131170
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AA seq
1735 aa
AA seq
DB search
MADSEMYVRSSRELWTILLGRSALREPAQIEEELDRNWERLLQGLCYYKTPSSSAAEKLK
ADKDVAQPLKDVGLRISKLLGLDQQQSVQILQCYLQEDYRGTRNTLKDVLQDERPSQALL
LKIADYYYEERVCHLRCVLLLLTYFQDERHPYRVEYSNCVNKLEKDLVNNYQKQFETLFK
AESPTWETHGNLMTERQVSRWFLQCLREQSLLLEILFLYYAYFEMGPGDLLSFTKMFKEQ
GFGLRQTNRHLVDKSMDALVDRIGYFSCLILVEGMDIDFLHKCALEERTEQHQFSNTPAI
SKEMDQMLLTFGDIPHHGPVLLAWVLLRHTLSPDESSPVIRRIGNTSLQLGVFQYLTTML
QGLGGTGNNCTASTARMCIYGLLSFVITSFEEETLGSQQHLINAACEVLSAPSLAELFWE
TKPTMGLGMILDSAMGMFPHKTGLLLQLLTALLSDKSTAKKVYIFLDKMSFYTEVYKTKP
NDVISREDETLWRRQAPKLLYPLGLGQTNLRMPQGVLGQVAVGEQGYVVRWDYSYSAWIL
FTCEIEMLLHVVSTADVILHCERVKPILDLVHKMISTDWTVSDCLLPLTSRIYMLLQRLT
SVINPPVDVIASCANCLIVLAARMPGKVWSSLHHTGFLPFASSPLTNMAQSISAEGMKAG
NYGNLLVLIEQPRGEYAVTIAFLRLVTTLVKGQLGSTQDKGLIPCVLLVLKEMLPTYHKW
RYNTHGVRERIGCLILELVHAILNLSPEGEASGSTPTLQSLCIYSLANTEAGQAVVNIMG
VGVDTIDVVLAAQPSSGGSEGPGQILIQTVKLAFSVTNNVIRLKPPSSAVSPLEQALTQH
GGHGSNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGGDAAAIRDAFLTR
LQSRTEDMRIKVMILEFLTVAVETQPGLIELFLNLKVKDGAEGSKEFLLGEWSCLQVVLD
LIDSRQQGKYWCPPLLHRAALAFLHALWQDRRDSAISVLRTKERFWENLTTPLFGTLPAP
SDITEPCVLETCAFVMKIIGLEIYYVVSGSLERSLKDALQKFSSGRRYEYWSQYVKSLVV
HVAETEEEEGVHSFSETQMVISAWRMLLILSTSHSDVMQLKEDSARLKLFMDVLDGTKAA
LLVPMSVPCLRLGSMMATLLLILLKQWRSVVATAPDVLAPLSLILESVLQADQQLMESTK
AKVFSALISALQIQGLNGGEISQLPQLLLCVCETVQDEALALIDSTRHAAHVRDVPDDKD
SMETDAVRSIQKDQRDGVCVLALHLAKELCRADEDGEHWVLVMRKIPALHSILSALELSL
RSKQNLYFTEAALHLLLTLARTPQGAAAVAGAGVIQSICLPLLSVYEVPSNGASQGFSRK
SQDAPCWPGVYRLSMSLMEILLKTLRYNFINEALDFVGVHQERILQCLNAVRTVQSLVCL
DEADHTVGFLLQLSSFCKEWQFHLPHLLRDVQINLCYLCQTCTYLLHSRNMLHHYLQAKN
GEALPSGPRAQRDPQTPSKAAAEGGGGEREEAEQKALLAVQCSLLKILSKTLATLQHFTP
DCCQIILDQCMDLAEYRTLFVLSFTTSAFDADVAPSFGTLLATINVALSMLGEVEKKEPA
SLSVASLASSEETQALKSLLMFTMENCFYVLISQAVRCLKDPTIAPRDKQRLKQELGSEL
STLLSSLSRHFRRGAPSSPASSLLPSPQTPGAKASHEGQEPFIQLVQAFVRHIQR
NT seq
5208 nt
NT seq
+upstream
nt +downstream
nt
atggcggactcggagatgtatgtgaggagcagccgagagttatggactatcttactgggg
agatctgcattgagggaaccggctcaaatagaggaagaactagatcggaattgggaacga
ttacttcaagggctgtgttactacaaaacacccagttcatcagcggcggaaaaactgaaa
gcggacaaagatgtggcccaaccattgaaggacgttggtctgaggatcagtaaactgctg
ggtctggatcaacagcagagtgtacagattttacaatgttaccttcaagaagattacaga
gggacccgtaacacactgaaggatgttttgcaggatgagagaccgagccaagccctactt
ctgaagatcgctgactattactacgaggagcgtgtgtgtcatctgcgatgcgtcctcctc
ctgctgacgtactttcaggatgagagacacccttacagggtggagtactccaactgtgtg
aacaagctggagaaggatctggtcaacaactaccagaagcagtttgagaccctgttcaaa
gctgaatccccgacatgggagacgcatggcaacctcatgacggagaggcaggtgtcccgc
tggttcctgcagtgtctgagggagcagtccctgctgctggagatcctgttcctgtactat
gcctactttgagatgggtcccggagacctgctcagcttcaccaagatgttcaaggagcag
ggcttcggccttcgccagaccaacagacacctggtagacaagagcatggacgccctggtc
gaccgcatcgggtacttcagctgtctgatcctggtggaaggcatggacatagacttcctc
cacaagtgtgccctagaggagcgcacggagcagcaccagttctccaacacccctgccatc
agcaaggagatggaccagatgctgctgacgtttggtgacatccctcaccacgggccagtg
ctgctggcctgggtcctgctgagacacaccctgagcccagatgagtccagccccgtcatc
agacgtatcgggaacacctccctacaacttggggtgtttcagtacctcactacgatgctg
cagggtctgggaggcactgggaataattgcacagccagtacagccaggatgtgtatctat
ggcctcctctcctttgtcattacctcctttgaagaggagacgctgggcagccaacagcat
ctgataaatgcagcgtgtgaagttctctctgcgcccagtctggctgagctcttctgggaa
acgaagcccactatggggttgggaatgatcctggatagcgcaatgggaatgttcccacac
aagactggtctgctgttgcagctcctcactgcgctcctgtcagataagtccaccgcaaag
aaggtgtacattttcctggacaagatgtcgttctacaccgaggtctacaaaacgaagccc
aatgacgtcatctctagagaagacgagacactgtggaggagacaagcaccaaaactcctc
taccctctcggcctgggccagactaacctgcggatgcctcagggtgtgctgggtcaggtg
gctgtgggggagcagggctacgtggtgcgctgggactactcctacagtgcctggatcctg
ttcacctgtgagatagagatgctgctccacgttgtctctactgcagatgtgatcttacac
tgtgagcgtgtgaagcccatcctggacctggtccataagatgatcagcacagactggact
gtgtctgactgtctgctgcccctcacctcacgcatctacatgttactgcagaggttgaca
tcagtcatcaaccctccagtggatgtgatagcgtcctgtgcgaactgcctcatcgtcctg
gctgctaggatgcctggcaaggtttggtccagcttgcaccacactggttttctgcccttc
gcctcctcccctctgaccaatatggcacagtccatcagtgctgaggggatgaaggcaggt
aactacggcaacctgctggtcctgatagagcagcccagaggggagtacgctgtgaccatc
gccttcctgcgcctcgtcaccaccctggtcaagggccagctgggcagcacccaggacaag
ggcctcatcccctgtgtactgctggtgctgaaggagatgctacccacttaccacaagtgg
cgctacaacacccacggagtcagagagcggatcggttgtctgatcctggagttggtccat
gccatcctgaacctcagtccagagggagaggctagtggcagcacgccaaccctccagtct
ctgtgtatctacagtctggctaacaccgaggctggccaggcggtggttaatatcatgggg
gtgggagtggacaccatagacgtggtcctggctgctcagcccagcagtggtggctcggag
ggcccaggtcagatccttatccagacggtcaagctggccttctccgtcaccaacaacgtg
atccgcctcaagccaccgtcgagcgctgtttcgcccctggagcaggcgctgacacagcac
ggtggccacggcagcaacctaatcgccgtgcttgccaagtacatctaccacaaacacgac
ccggccctaccgcgcctcgccatccagctgctcaagaggctcgccacggtggctcccatg
tcggtgtacgcctgcctgggcggtgacgcggctgccatcagggatgcctttctgacgcgg
ctacagagcagaacggaggacatgaggatcaaggtgatgatcttggagttcctcaccgtg
gccgtggagacccagccaggcctcatcgagctcttcctcaacctgaaggtcaaggacggc
gcagaggggtcaaaggagtttctgctgggtgagtggagctgtctgcaggttgtgttggac
ctgattgactccaggcagcaggggaagtattggtgtccccccctgctgcaccgcgctgcc
ctggccttcctccacgccctgtggcaggaccgacgggatagcgcaatctctgtcctacgt
accaaagagaggttttgggaaaacctgaccacgcctctgtttggaacccttcccgccccc
tcagacatcactgagccttgtgttctggagacctgtgccttcgtcatgaaaatcatcggc
cttgagatctactatgtagtcagtggctctctggagcgctctctgaaggatgcactgcag
aagttctccagcgggcggcgctacgagtactggtcccagtatgttaagtccctggtggtc
cacgtggcagagacggaggaggaggagggcgtgcactctttctctgagacccagatggtc
atctcagcctggcggatgctgctcatcctctccaccagtcattcggatgtgatgcagtta
aaggaggactctgccagacttaagctcttcatggacgtgctggatgggaccaaagctgct
ttgctggtgcccatgtctgtgccctgtctacgtctgggatccatgatggctactcttctg
ctgatcctacttaaacagtggagaagtgtggttgccacggcccctgacgtactggccccc
ctctctctgatcctggagagtgtcctgcaggccgaccagcagctgatggagagtacaaag
gccaaggtgttctctgccctcatctctgcactgcagatacagggactcaacggtggggag
atctcccaactgccccagctgctgctgtgtgtgtgtgagacggtgcaggacgaggcgctg
gcactgattgacagcactcgtcacgcggctcatgtgagggacgtcccggatgacaaagac
agcatggagactgacgccgtccgcagcatccagaaggaccagagagacggggtgtgtgtg
ctggccttacacctggccaaggagctgtgtcgtgccgacgaggacggggaacactgggtt
ctagtgatgaggaagattcctgctctccactctattctcagcgctctagaactcagcctg
cgctccaaacagaacctctacttcaccgaggctgccctgcacctgctgctcacgctagcc
cgcacaccacagggtgcagcagcagtagccggggccggcgtcatccagagtatctgtctc
cctctgctcagtgtctacgaagtgccctctaatggagcctcacagggtttctcccgtaag
tcccaggatgctccctgctggccgggggtgtaccgcctctctatgtccctcatggagatc
ttgctcaagacgctgcgctacaacttcatcaacgaggccctcgactttgtcggagtgcac
caggaacgcatactgcagtgcctgaatgcggtgcggacggtccagagtctggtgtgtctg
gatgaggctgaccacacagtgggcttcctgctgcagctgtccagcttctgtaaggagtgg
cagttccatctgccccatctgctccgagatgtacagatcaatctgtgttacctgtgtcag
acgtgcacctacctcctccacagcaggaacatgcttcatcactacctccaggctaagaat
ggggaggcgctgccctccggcccccgtgcccagagagatcctcagacgccctccaaagct
gcagccgaaggagggggcggggagagggaggaggcggagcagaaggccctgctggcggtg
cagtgcagcctgctgaagatcctcagtaaaactctggccacgctgcagcacttcaccccc
gactgctgccagataatactggaccagtgtatggacctggctgagtacaggaccttgttt
gtgctgagcttcaccacctcggcctttgacgctgatgtggcgccctcttttggaaccctg
ctggcaaccatcaacgtggccctaagcatgctgggagaggtagagaagaaggagccagcc
tctctgagtgtggcctccctggcctcgtcagaggaaacccaagccctcaagtctctgctg
atgttcaccatggagaactgtttctacgtgctcatctcacaggccgtccgctgtctgaag
gaccccaccatcgcccccagagacaaacagagactcaaacaggagcttggctctgaactg
agcaccctcctctccagcctgtcccgtcacttccgccgtggcgccccctcgtccccggcc
agcagcctgctgccatctccccagaccccaggcgccaaggccagccacgagggtcaggag
cctttcatccagctggtgcaggcctttgtacgccacatacagaggtag
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