Salvelinus sp. IW2-2015 (Arctic char): 111962086
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Entry
111962086 CDS
T05762
Symbol
spg11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salp03400
]
111962086 (spg11)
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
111962086 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
111962086
NCBI-ProteinID:
XP_023840671
LinkDB
All DBs
Position
LG4q.1:29:49540262..49618310
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AA seq
2416 aa
AA seq
DB search
MIMINMLHRSETRDNCALEVALIPESNLCENVVDTAKAKMAQGCSLLCCLSGAGGLTVGD
ISESKAPGRTVDGXYTDFAWEEVTVYNGARGSPRLLAVSAEFELTLYELEVEGPTSGPLV
SASEFTADKLLQLVKEKVLSVAEVVSLRLLSFVDARSFLLLNSSVVLQLQWQQGAEPETL
SCCSIVLPPKSPLDTCTGYQLCRGILFVLTTAGVIYVFDSAEGRKLASVDLPSYRTAGLG
EDEPAPYLDSFCLLQVSPDLGTAVAATQSNTAFAVDLNHYFSMYPEHLMCRVVPSRPPLR
PQGPCDEDSLSSSTYSHTVLGSSFSTDRSWEARLTSLYNKAKATPPSSPQTPGAPWFKDF
PHIECGRAAIAAKLSQSRVPSGGATMQFSVPDTTTPVLLSVSEFSTVLTFVSPGNSETTV
AFWDLQSQSVTYHRPTSPTXPIQRTAEEQLSLLLKTSGLSLVLFAVSQEELLNRLMVFGS
AGTVDSLCHLNEWGRCSIPIHALQAGLKNHQLDTVDFFLKSKKNVLTPPSGYILPDQSAA
ISTQSQLKNVQDLCPALDLLRCAIRDNHTEAQSRQFSEQLLSITLAFLNTQVRAVLSATE
ELDENLQECVEILDSYVSDLRTFMKRFPWPTGGDTSTLVPSPIPVPEEVENDDWGSLSSE
EVVERAVLTKQIPRAQAYLRSQNRPDQRLEELRSTGLRLAFDCLTHKDLEQATALLRNMG
FNVKKQLHNICLYTDDRDLRDFVVEELSKQSYLSDEETQRVEFIKQIEALCAVPETRSTD
PVGRQRVPQMAQTDPGSKSLLEELVDQRGSQSEQTLWSSLRLDWVRHWDHNTQRAILLSR
LQDSAVSSCDPGVLWSYLTSHHDQRRVTEWIESLAAQNGDPSSAPQWPALTAEVVNNNTR
CSAHMRNHILYMLARRGVFIQAEVADFDQLLWRLGQAGGVMQASPPMPQYRSHQGHDLHT
RFIHHCLDNGLRYLLYTYLEHNRLTPRNCSALADNGLYESHPWFEMLVKMQEITRDLSDP
ERVFQASLTSAQVLIPGSQAMVSSMLLEGHSLLALATIMFAPGGIDQVVSQGERAGSSVS
RVDPQLLKMALSPYPKLKAALFPVSGPRGTTATTSDISVYHLMQSLHPLDPSRLFGWQSA
NTLGSTETSVELPHFSSPHLVSKYALIENLDFLYYLRHGRPSFAYGTFLVQQLANSNELK
SQLSHAAEQAYSLAMLHFSVPSVAAACVCFCELLGVCSLKLRVDLKALSLILRLRSQRPG
GTSTFSLKDLLAAKGSKLVERETAEELLFDLEEAVKDSLERKGISRSSYEAGQEWALPIQ
FCQLHALPLSSVYPQDCATDSQWLHFLLFVQLHSYPPQQVRSLATQFSPFLQAHLTLAFQ
SLQLSSQWRVGEVEDGEAQGQVTLPSEEASDPPKELFQVLLQSQEQASPWRHLLGEALAH
HCPTLTTLAACHQEADLLQCLCVWVLTSVDEVIATEATAHLEESPQRHEWNLHDLSIIWK
XLLRKCRIRPLIRGFQLFQRDSPLIQVLLMYELCYDYKNYPEAKKKLXEFQKCLITLRSS
GAHVPAGIPLQWVECQASVLLLTMMQQCSTQYELRRLLQLLADMERLLKSNGPDFKKLSL
LSQVLQDTSVSLSPRLLERYSPDILQGECQSMLEKLQDSGLFHKARQVAELAGLPIDSLV
INELLQDLSALKAKRHWERRETRVSFWRKCHEQFRTNSTDPGAASEFFLAQAGASEPHRG
SVAETELLCVQERCLLLSLAGHWLSLLTQAPLARLEDLEKQLWTSRVRQQVLLTAMEKES
MFALPAPTIAPEENSYEALIREFSFSKMAVLNEPRYLSLDGLPSFSPEEEGGEETGSEEQ
GALAILVGQLLDEGCIHEASRVCRYFSFCSRDMWVMLHCRGLASGELQAGLQDMLTFQGL
PKKSIPSSTSFSSLSSFVMVPSPEDQTVTQLQMLVNECRHGKSYCKQVLSLYELSKELQC
SYSEISAEEPQAVLCKVLLSQQPERYKKAQAFISVQGLQPDTVAQLISTAVVQGLLASAQ
DGETAEKQMFSPEEGRESFLQLAKLCGDPNLVGIKLLDHIPTVPLGELGCTVELLILAHD
CFSLTCNMEGIVRVLQAARHLSHAHLAHSEHYGLLVRLLTGIGRYNDMTYIFDLLNQNHR
FEMLLRKKVESNFRLKTALLDYIKRCLPGDSEKYNMVALCFSMCREIGENHEGAARTQLK
LIESQPWAVTPELKSSLIKVLTLLKDAAESYSKDSCVRQAARCVKMAKLTTLQLHFLNHG
QDQRVINLRQSDLLGAIVALPRCYQAFVLSEAYDYSPDWAEVLYQKVILSGDFAYLEEFR
LHRPLPACLFEDISQKLTHNTPPSSAGQNLKRLLQHCDDVYTYYKLAYEHKFFDVANMLL
QDPKTSSYLNDRLGTR
NT seq
7251 nt
NT seq
+upstream
nt +downstream
nt
atgattatgataaatatgttgcacagatctgaaactcgagataactgtgcattagaagtc
gctctcatcccggagagcaacctctgtgaaaatgttgtagacacagcaaaagccaaaatg
gcccaaggctgctccttgctctgctgtttgagtggtgctggggggctgacagtcggcgac
atttcagagagcaaggcaccggggagaacggtggatggcycatatacagactttgcctgg
gaggaggtgacagtttacaatggagcccgtggcagccctagacttctggctgtgagcgct
gagtttgagctgacactgtatgaactggaagtagagggccctacctctggccctcttgtc
tctgcctcggagttcacagcagataagctactgcagctggtcaaggagaaggtcctgagt
gtggctgaggtggtgtccttgaggctactgtcctttgtggatgccagaagctttctcctg
ctcaactccagtgttgtgttgcagctgcagtggcagcagggggctgaaccggagaccctg
tcctgctgcagcatcgttctgccccccaaatcccccctggacacatgcactggataccag
ctctgcagaggcatactctttgtgttgaccacagctggagtcatatatgtgtttgacagt
gctgaggggaggaagctggccagtgtagacctgccctcgtaccgcactgctgggctgggg
gaagacgagccggccccctacctggactccttctgtctcctccaggtgtctcctgacctg
ggtactgctgttgctgccactcagtctaacactgcctttgctgtcgacctcaaccactac
ttcagcatgtacccagagcatctgatgtgtcgggtggtccccagtcgccctccactcagg
ccccagggtccctgtgacgaggacagcctctccagctccacctacagccacactgtgctg
ggcagctccttcagcactgaccggtcctgggaagctcggctgacttctctgtacaacaag
gccaaggctacccctccctcttctcctcagactccgggggctccttggtttaaggatttc
ccccacatcgagtgtgggcgggcagctatcgctgccaagctctcccagagcagagtccca
tcagggggagccaccatgcagttctctgtgcccgacacaactaccccagtgctgctctct
gtctctgaattctccactgtgttgacctttgtctcccctggcaacagtgagacaactgtg
gccttctgggatctgcagtcccagagtgttacctaccaccggcccacctcgcccaccmtg
cctatccagcgtaccgcagaggagcagctcagcctgcttctgaagacgtcaggcctgtcc
ctggtgctgtttgctgtgtcacaggaggagctgctcaacagactaatggtatttggcagt
gctggcacagtggactctctgtgtcaccttaatgaatggggccgctgctccatccccatt
cacgccctgcaggctggtctgaagaaccaccagttagacacagtggacttcttcctgaag
agcaaaaagaacgtccttactccaccctctgggtatattctacctgaccaatcagctgcc
atctcaacccagagccagctgaagaatgtccaggatctgtgtccggctctggaccttctg
cgttgtgccatcagagacaatcatactgaggcccagagccgacaattttcagaacagctg
ctcagcatcaccctggccttcctcaacacacaagtcagggccgtcctctccgccacagag
gagctggatgagaacctgcaggagtgtgtggagatcttggatagttatgtttcggatctg
cgcaccttcatgaagaggtttccctggccaacaggtggcgacacttccacccttgtccca
tcccccatacctgtacctgaggaggtggagaatgatgactggggttccctctcttctgag
gaggtggttgagcgggcagtgctgaccaagcagattccccgggcccaggcctacctgagg
agccagaacaggccagatcagcggctggaggagttgagaagtacggggctgcgtctggcc
ttcgactgcctcacacacaaagacctggagcaggccactgcactgctcaggaacatgggt
ttcaacgtaaagaagcaactgcataacatatgcctctacacagatgaccgggacctaagg
gactttgtggtggaggagttgtcaaagcagagctatttgtctgatgaagagacacagagg
gtggaattcatcaaacagattgaggctttgtgtgctgtgcctgagacgcgctccacagac
cctgtgggcagacaacgggttcctcagatggcccagacagacccagggtctaagagcctg
ctggaggagctggtagaccagagaggctcccagtcagaacagacactgtggagctcgctg
cgtctggactgggtcagacattgggaccacaacacccagagagccatcctgctgtcacgc
ctacaagactcggctgtcagttcctgtgacccgggggtcctgtggtcatacctcacctcc
caccacgaccagcggagggtcaccgagtggattgagagcctggccgcccagaacggtgac
ccttccagcgcccctcagtggcccgccctcacggcagaggtggtcaacaacaacacccgt
tgcagcgcccacatgaggaaccacatcctctacatgttggccaggagaggagtgttcatc
caggccgaggtggctgattttgaccagctgttgtggaggctgggccaggcaggtggggtg
atgcaggccagcccacccatgccccagtaccgctcccatcaaggacacgacttacacaca
cgcttcatccaccactgcctggacaacggccttcgctacctgctctacacctacctggag
cacaacaggttgacacccaggaattgctctgctctagctgataatggtctatatgaaagt
cacccgtggtttgaaatgctggtgaaaatgcaagagattaccagagacctctcagatcca
gaacgcgtgttccaggccagtctgaccagtgcccaggtcctcatcccaggcagccaggcc
atggttagcagcatgctcctggaaggacacagtcttctggccctcgctaccatcatgttt
gccccgggtggcatcgaccaggtggtgagtcagggggagagggctgggagctctgtgtct
agggtggacccccagctactgaagatggccctgagcccctaccccaagctcaaggcagcg
ctcttccctgtgagcggaccacgagggaccaccgccaccacatccgatatctccgtctac
cacctcatgcagtctttacatccattggatccatctcgactgttcgggtggcagtctgcc
aatacactaggctccaccgagacctcagtggagctgccccatttctctagtcctcacctc
gtcagtaaatacgccctcattgagaacctcgacttcctgtactatctgcgtcacggacga
ccatcgttcgcctacggaacgtttctcgtccaacagctagccaactccaacgaattgaag
tcacagctcagtcatgcggcggagcaggcctacagcctggccatgctgcatttcagcgtt
ccctctgtggcagctgcatgtgtgtgtttctgcgagctcctgggtgtgtgtagcctaaag
ctgcgggtggacctcaaagccctcagtctgatcctccgactccggagccagaggccggga
gggacgagcacattctcccttaaagacttattggctgctaaaggcagtaagctggtggag
agggagacagcggaggagctgctctttgacttggaggaagctgtgaaggacagtttggag
aggaagggcatcagcaggtcatcctatgaggcaggtcaggagtgggctctmcccatccag
ttttgccagctacatgccctgcccctgagcagtgtgtacccgcaggactgtgcaaccgac
agccagtggctacacttcctgctctttgtccagctgcacagctacccccctcagcaggtg
aggtccctggcgacccagttcagcccattcctgcaggcccacctgaccctggccttccag
agcctgcagctcagctctcagtggcgggtgggggaggtggaagacggggaggcccagggt
caagtcaccctgcccagcgaggaagcctccgacccccccaaggagctgttccaggtgctg
ctgcagagccaggagcaggccagcccctggagacacctcctgggggaggccctggcacac
cactgccccacgctcaccacactagctgcctgtcatcaggaagccgacctgctccagtgc
ctctgcgtctgggtcctgacctctgtggatgaggtcattgccacagaggctaccgcccac
ctggaagagagcccgcaacgtcatgagtggaacctccacgacctgtcaatcatctggaag
aractgctgaggaaatgcaggatcaggcctctcatacgaggcttccagctcttccagagg
gactctcccctgatccargtgctgctcatgtacgagctgtgctacgactacaaaaactac
cctgaagccaagaagaaactcwttgagttccagaaatgcctgatcacgctgaggagcagt
ggtgctcatgtgccagcaggcatccctctccagtgggtggagtgccaggcctcagtcctc
ctgttgaccatgatgcaacagtgctccacacaatacgagctgcgcagactactgcagctg
ctcgcagacatggagcgcctgctcaagtctaacggcccggacttcaagaagctcagcctc
ctcagccaggttctccaggacacctcggtgtctctctctcccaggctgcttgagagrtat
tcccctgacatcctgcagggagagtgccagagcatgttggagaagctgcaagacagcggc
ctgttccacaaggcccgccaggtggccgagctggcagggctgcccattgacagcctggtc
atcaacgagttactccaagacctcagtgccctgaaggccaagcggcactgggagaggagg
gagacccgggtatccttctggagaaaatgtcacgagcagttcaggactaacagcactgat
cctggggccgcctcagagttcttcctggcccaggcaggtgcctctgagcctcaccggggc
tccgtggccgagacagagctgctytgtgtccaggagaggtgccttctcctcagcctggcc
ggccactggctgtccttgctcacccaagctcccctggcacgtctcgaggacctggagaag
cagctgtggacaagccgagtgcgccagcaagtcctgctcaccgccatggagaaggagagc
atgttcgccctcccggcgcccaccatagcccccgaggaaaactcctacgaggccctgatc
agggagttctccttctccaagatggcagtgctcaacgagcccaggtacctgagcttagac
ggcctgcccagcttctcccctgaggaagagggtggggaggagactgggtcggaggagcag
ggtgctctggctatcctggtggggcagctgttggacgaagggtgtatccacgaagcgagc
cgtgtgtgccgctacttctccttctgctcccgggacatgtgggtaatgctgcactgccga
ggcctggcctcaggcgagctccaggctggcctgcaggacatgctcacctttcagggcctg
cccaagaagagcattcccagctcaaccagttttagcagcctgtcctcctttgtgatggtg
ccctccccagaggaccaaacggtgactcagctccagatgctggtgaacgaatgtcgccac
ggaaagagctactgcaagcaggtcctgagtctctacgagctctccaaggagctgcagtgt
tcatacagtgagatctcagctgaggagcctcaggcggtgctgtgtaaggtgctactgtcc
cagcagccggagcgctataagaaggcccaggccttcatcagtgtgcagggcctgcagcct
gacaccgtggcccagcttatatccaccgccgtggtccagggcctgttggcctctgcacag
gacggagagactgcagagaagcagatgttcagtccagaggaagggagagagtccttcttg
cagctggccaagctgtgtggggaccccaacctggtgggcatcaaactgctggaccacatc
cccactgtgccactgggagagctcggctgcacggtggagctgttgatcctggcccacgac
tgcttcagtctgacctgtaacatggagggcatagtgagggtgctgcaggctgcccgccac
ctcagccacgcacacctggcccacagcgaacactacggcctgctggtgcgtctcctaact
ggcatcggcagatacaatgacatgacctacatcttcgacctgctcaaccagaaccaccgc
ttcgagatgctgctcaggaaaaaagtggagtcgaacttccggctgaagacggccctgctg
gactacatcaagcggtgtttgccgggggacagtgagaagtacaacatggtggccctgtgc
ttcagcatgtgcagagagataggagagaaccacgagggagccgcccgcacccagctcaaa
ctgatcgagtcccagccttgggcagtgacccctgaactcaaaagttccttgataaaggtt
cttactctcctgaaggatgctgcagagagctattctaaggactcatgtgtacgccaggca
gcacgttgtgtcaaaatggcaaagctgaccacactccagctccacttcctgaaccacggt
caagaccaacgtgtcatcaacctgcgccaatcagatctccttggtgccattgtggcactg
ccscgctgttaccaggcttttgtgttgtcggaggcctacgactacagtccagactgggcg
gaggtgctctaccagaaggtcatcctcagtggagactttgcttacctagaggagttccga
cttcacaggccactccccgcctgcctgtttgaagacatatcccaaaaattgactcacaac
acgcctccgagcagtgcgggccagaacctgaagagactattgcaacactgtgatgacgtt
tacacctactacaagcttgcgtatgaacacaagttctttgacgtggccaacatgttactt
caggaccccaaaacaagcagttacctaaacgacaggctgggtactaggtag
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integrated database retrieval system
