Salvelinus sp. IW2-2015 (Arctic char): 111962631
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Entry
111962631 CDS
T05762
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111962631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111962631
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111962631
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111962631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
111962631
NCBI-ProteinID:
XP_023841624
LinkDB
All DBs
Position
LG4q.1:29:82293453..82329706
Genome browser
AA seq
2425 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYTIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSCNADLRGFAAQFVKQRLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIEAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGVSGEPFIQACVTFLKRRCPSIIGGLALEKDQPKSALLPPETMATMLGCLQS
CAGSVSQELSETILTMAANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQ
MDPLTAMGSLNLGSSATSHTQSMQGFPTPLGSAFRNPQSPAKAFPALSNPTTPFGGIGSL
SSQLGNPGPLGSGIGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQSKMASDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLALAQAQSQPPKAPQPGQPSTLVTTATTTTTVAKTTTITRPTPGSFKKDVPPSINT
TNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ
YLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLL
KNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIF
RPQNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKSL
EEQLSAPKKEAKPPEEMIPIVSTGIQHFQTGMPLVGDFLPFAAAPSTPAPTTACSATGPP
TPQFSYHDINVYALAGLAPHINININIPLLHAHPQLKQCVRQSIERAVQELVHPVVDRSI
KIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSF
AAALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHA
RQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTG
FLAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALARNS
RDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITR
CLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVD
ERSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMM
HSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTD
DLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGE
ATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETIN
FQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLF
KYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLI
LSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTF
LSELRSNLQVGGATLGPWKYLQHNDTSLDQVSNEPGNRYNIQLINALVLYVGTQAIAHIH
NKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYL
FAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEK
LFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7278 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacttggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagacaggcatttattacgctgtcttttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgatccaggagtgtgtttca
ctgatttcaaagccaaattttatttcaacactctgctacacaatcgacaatcccttgcac
taccagaagagtttgaagccttccacccacttgtttactcagttgagtaaagttctcaag
ctaagcaaggttcaagaagttatatttggccttgctttgctgaattcgtgcaacgcagac
cttcgtggttttgccgcgcagttcgtcaaacaaaggctcccggacctcctccgctcgtac
gtggacgcggaccttggaggaaaccaggaaggtggcttccaagatattgccatagaggtc
ctgcacctgctcctctcccatcttctgtttggccagaagggagccagcggggtcggacaa
gagcagattgaagcgttcctcaagacactgtgtagagatttcccgcaggagcgctgccct
gtggtgctcgcaccactgctataccctgaaaaacgggacattctgatggacaggattctg
ccagactcgggagagttagccaagaccatgatggagagttctctcgcagagttcatgcag
gaagttggctatggcttttgtgcaagtctcgatgaatgccgcaacataatcctacagtat
ggggtgcgagaggttactgccagccaggtggccagggtcctggggatgatggctcgcacc
cactctggcttgtctgatggaatccccctacagtccatctcggctccgggcagtggcatt
tggagcgatggaaaggacaaaagtgatggctctcaggcgcacacctggaatgtggaagtt
ctaattgatgtggtcaaagaagttaaccccaatctgaactttaaagaggtgacctacgag
ctcgatcaccctggcttcataatccgggacagcaagggactgcagatggtggtgtatggg
atccagaggggcctgggcatggaggtgttccctgtcgacctaatctaccggccctggaag
catgctgaaggacagctgtcattcatccagcactccctcatgagcccagatgtgttctgc
tttgctgactacccctgccacaccgtagcaatcgacatactgaaggccccacctgaggac
gataaccgagagatagccacctggaagagcctggacctggtggaaagcctcctgcgcctc
tctgaggtgggccagtacgagcaggtaaagcagctcttcagctttcccatcaagcactgt
cccgacatgctggtgctggcactgctgcagataagcacctcctggcacaccttgcgccac
gagctcatctccaccctcatgccaatcttcctgggcaaccaccccaactctgctatcatc
ttacactacgcctggcatggacagggccagtccccctctatccgtcagctgattatgcac
tctatggctgagtggtacatgagaggggagcagtacgaccaggccaagctgtcccgcatc
ctggatgtggcccaggacttgaagtctctatctatgctgctaaatggtactccatttgcc
ttcgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctgactgacaaaatccgagagcatggggtgagtggtgagcccttcatccaggcgtgtgtt
acgttcctgaagagacgttgtccctctatcattggtggtctggccctagaaaaggaccag
cccaaaagcgccctccttcccccggaaacgatggctaccatgctgggttgtctgcagtcc
tgtgctgggagcgtctctcaagagctctccgagactatcttgaccatggctgccaactgt
agcaacgtcatgaacaaagcccgccagccgccaccaggggtcatgccaaagggacgtgct
cccagcaccagcagccttgatgcaatttcccctgtgcaagtgtcggtgtctcctctccag
atggatcccctgacagccatgggctccctcaacctgggcagctctgccacctctcacaca
cagagtatgcagggctttcccaccccgctgggctctgctttcagaaacccccagtcccca
gctaaggccttccctgcactgtccaaccccaccacaccatttggggggattggaagtctc
tcttcacagctaggtaacccaggtccgctgggatcaggcattggctctggtattggttct
ggtcttggaatgccagcggtgagcagtgatccgtttgggacgaggaagatgagcacacca
ggcctgaatccgcccacctttcagcagagtaagatggcctctgacctatctcaggtgtgg
ccagaggctaaccagcactttagtaaggagattgacgatgaggctaacagctacttccag
cgcatctacaaccaccccccacaccccaccatgtctgtggatgaggtgctggagatgctg
cagaggttcaaggactccaccatcaagcgagagcgtgaggtctttaactgtatgctgagg
aacttgtttgaggagtaccgcttcttcccccagtaccctgacaaggagctacacatcacc
gcctgcctgttcggggggatcattgagaaaggccttgtcacctacatggccctcggactg
gccctccgatatgtactcgaagccttgaggaaaccatttgggtccaaaatgtattacttt
ggaatcgctgctctagatagattcaaaaatagactgaaggactatccccaatattgtcag
cacttggcctcaatcggccactttctgcagttcccccatcatttacaagagtgcgtgcag
tatatcgagtatggccaacagtcacgggaccctccggtgaagatgcagggatccatcacc
accccaggaagcctggcgttggctcaagctcagtctcagcctcccaaagccccccagcct
ggacagcccagcacactggtcaccacagctaccaccaccaccactgtcgccaaaaccact
accatcacacgacctacccctggcagcttcaagaaggatgtgccgccctccatcaacacc
acaaacatcgacacacttctagtagcaacagaccaaaccgagaggattgtggaaccccca
gaaaatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaacatgaca
cagaaggttgaggagttaaaggaaactgtgaaagaggagtttatgccctgggtctcccag
tatctggtcatgaagagggtcagcatcgagcccaacttccacagcctatactccaacttt
ctagacactctgaagaaccctgagtttgtcaaaatggtcctgaatgaaacttacagaaac
atcaaggttctccttacctctgataaggcagctgcaaacttctctgatcgatccctactg
aagaatttgggtcactggcttggtatgatcactctggctaaaaacaagcccatcctgtac
acagatttggaggtaaaatccctcttgttggaagcctatgtcaaggggcagcaggagcta
ctgtatgtggtcccgtttgtggccaaagtcctggaatccagtttgcgtagcgtgatcttc
cgacctcagaatccctggaccatggccatcatgaatgttctggcagagttgcatacggaa
catgatctgaagctgaacttaaagtttgagattgaggtgctgtgtaagaacttatcactg
gacatcaatgacctgaagcctggcaccctgctgaaagacaaagacaagttgaagagtctg
gaggagcagctctctgcaccaaagaaagaggccaagccccctgaagaaatgatccctatt
gttagcacaggtatccagcactttcaaactgggatgccccttgtcggagactttcttcca
tttgcagctgcaccatccactcccgccccaaccaccgcttgctcagctactgggccccct
accccacagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcccctcac
atcaatatcaacatcaacatccccttgctccatgcccaccctcagctgaagcagtgtgtg
agacagtccattgagcgggccgtgcaggagctcgttcaccctgtagtggaccgttccatc
aagattgccatgactacctgcgagcagatcgtcaggaaggactttgccctggactccgag
gagtcgcgcatgcgtgtggccgcccatcacatgatgcgtaacctgaccgccggcatggcc
atgatcacctgccgggagcccctgctcatgagtatcgctaccaacctgaagaacagcttt
gccgcagccctcagggcccccaccccccagcagagagagatgatggaggaggctgctgct
agggttgcccaggacaactgtgagctggcctgctgcttcatccagaagactgcggtggag
aaggctggcccagagatggacaagagactggccacggagtttgagctgaggaagcacgcc
cgtcaggagggtcgtcgctactgcgaccctgtggtgctgacctaccaggcagagcgcatg
ccagagcagatcagactcaaggttggaggagtagaccccaaacagctggcggtgtacgag
gagtttgccaggaatgttccaggcttcctacccagcaacgacctgtctcagcccactgga
ttccttgcccagcccatgaagcaacaggcatgggccacagacgacgtggctcagatctat
gacaagtgcatggcggacctggagcagcacctccatgccatccccccagcgctggccatg
aacccccagactcaggccctgcgcagtctgctggaggcagtggccctggctaggaactcc
cgggatggcattgctgctctgggcctgctgcagaaggctgtggagggtctgctcgatgcc
accagtggtgccgatgctgacctgctcctgcggtacagagagtgtcacctgctggtgctc
aaagccctccaggacggccgggcatacggaccacaatggtgcaacaaacagattaccagg
tgcctgattgagtgccgtgatgagtacaagtacaacgtggaggctgtggagctgctgatc
agaaaccacctggttaacatgcagcagtacgacctgcacttggcacagtctatggagaac
ggtctgcactacatggcagtggcatttgccatgcagctggtaaagctgctgctggtggat
gagcgcagtgtgagccacatcacagaggccgacctgttccacaccatcgagactctgatg
agaaccagcgcacactccagggccaatgcacccgaggggcttcctcagctgatggatgtg
gtccgctctaactacgaggccatgatcgaccgggcccatggagggcccaactttatgatg
cactctggcatctcccaagcgtctgagtacgacgacccgccgggcttgagggagaaggca
gagtacttgctgagggaatgggtcaacctgtaccactctgcagccgccggccgggacagc
accaaggccttttctgcttttgtgggccagatgcaccagcagggcattctgaagactgat
gacctgatcacgcgtttcttccggctgtgcacagagatgtgtgtggagatcagctaccgc
gcccaggccgagcagcagcacaatcctgcagccagcgccgccatcatcagagccaagtgc
taccacaacctggacgcctttgttcgcctcatcgctctgctggtcaagcactctggagag
gccaccaacacagtcaccaagatcaacctgctcaacaaggttctaggtattgtggttgga
gtgctgatccaggaccatgatgtaagacagacagagtttcagcagttgccttaccaccgc
atcttcatcatgctgctgctcgagctcaatgcccccgagcatgtgctggagaccatcaac
ttccagaccctcaccgccttctgcaacactttccacatcctgaggcctaccaaagcccct
ggctttgtctatgcttggctggagttgatctctcaccggatcttcatcgccaggatgctg
gcacacaccccacagcagaagggttggcccatgtatgcccagctgctcattgatcttttc
aaatacctggcgcccttcctgaggaatgttgagctcaacaaacctatgcaaatcctctac
aagggtaccctgcgtgtcctgcttgtcctgctgcatgacttcccagagttcctgtgtgac
taccactacggcttctgtgacgtcatcccgcccaactgcatccagctccgcaacctgatc
ctgagtgccttcccacgcaatatgagacttccagaccccttcactcccaatctgaaggtt
gacatgctcagcgagatcaacattgctccgcgcatcctcactaacttcaccggagtgatg
ccctctcagttcaagaaggatctggattcgtacctgaagacgcgctcccctgtcaccttc
ctctctgagctccgcagcaatctgcaggtagggggcgccactctgggtccctggaagtat
ttgcagcacaacgacacatctttagaccaggtgtcaaatgagccaggcaatcgttacaac
atccagctgatcaatgcactggtgctgtatgtggggacccaggccatcgcacacatccac
aacaagggcagcactccctccatgagcaccatcactcactcagcccacatggacatcttc
cagaacctggctgtggacctggacactgagggacgctatctcttcctgaatgcgattgct
aatcagctgcgctacccaaacagccacacccattacttcagctgcaccatgctctatctg
tttgctgaggccaacacagaggcaatccaggagcagatcaccagggttcttctggagagg
ctgattgtgaacaggcctcacccctggggactgctcatcacgttcatcgagctcatcaag
aaccctgccttcaagttctggagccacgactttgtgcactgtgccccggagatcgaaaag
ttgttccagtcagtggctcagtgctgcatggggcaaaagcaggctcagcaggtgatggag
ggcactggtgccagttag
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integrated database retrieval system
