Salvelinus sp. IW2-2015 (Arctic char): 111962639
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Entry
111962639 CDS
T05762
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
111962639
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
salp04040
]
111962639
Ion channels [BR:
salp04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
111962639
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
DUF2894
Motif
Other DBs
NCBI-GeneID:
111962639
NCBI-ProteinID:
XP_023841650
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Position
LG4q.1:29:complement(82458408..82493601)
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AA seq
845 aa
AA seq
DB search
MPKQQQQNRDLELDRLVRQVPLHHRPPTRTPSPSSPNSTLELPNVPFYPRLPPISLSRQL
SGLFNPTFHIEDDPTSALPSVSSRLSVHPAVNVEDVDSGGEGGGDGGEHHRHHIPQILTL
QDPNFKTLTVPGVSKTSRQSKVAEKEKKLYSQSEEEEEEMEIAVRAWPSQSSILSGDDGL
KERPASSASQASYVVNERLQELVKMFKERTERAKEKLIDPDHSDDDSPTASPARAPTPPP
APPEEPKEEEIEEQQPKPRLCCKVTPPRWIRALLHYRFPASIDPFTNLVYVLWLFFVTLA
WNWNMWLIPVRWAFPYQTPSNIYLWLLTDYLCDLIYILDILVFQPRLQFVRSGDIVFDKK
DMRVNYMKTFRFKMDVISLVPLELFYFKTGINPLLRFPRLLKIMSFFEFNDRLEGILTKA
YVYRVIRTTTYLLYCLHCNACLYYWGSAYEGLGSTQWVYDGQGNSYIRCYYFAVKTLITI
GGLPDPTTLFEIIFQLINYFVGVFAFSIMIGQMRDVVGAATAGQTYYRACMDNTVKYMAS
YRIPKDVQNRVKTWYNYTWQSQGMLDEQELLVQLPDKMRLDIAVDVNYDIVSKVSLFQGC
DRQMIFDMLKRLRSVVYLPGDYVCKKGEVGREMYIIKAGEVQVVGGPDGKTVFVTLRAGS
VFGEISLLAVGGGNRRTANVVAHGFANLFILDKKDLNEILVHYPESQKLLRKKARKMLTK
DKKPPKEPAQVIPPRTVTPKLFKAALDVAHQKTGLKGTLAKIKEKINKSSVSLQPSMSSS
LPPLSPVSSLDPEREANAMSPTIDSSTLLCPVSHCHGDETLSNEQGQVEGEVAGESGKKK
EKRKA
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagcagcagcagcaaaaccgggacctggagttggaccgcctggtccgccaggtc
cctctccaccaccgccctccgactcgcaccccctcaccgtcctcccccaacagtacccta
gagctgcccaacgtgcccttctacccccgcctaccacccatcagcctgtccaggcagctg
tcagggcttttcaaccccaccttccacatcgaggacgaccccacgtccgctctaccctca
gtgagctccaggctcagtgtgcacccagctgtcaatgtggaggatgtggattcaggcgga
gagggaggaggggatggaggggagcaccaccgccaccacattccccaaatccttacccta
caggaccccaactttaagaccctgaccgtacccggagtgtccaaaaccagccgtcagagt
aaagttgctgaaaaagaaaagaagttgtactctcagagtgaggaggaagaagaggagatg
gagatcgcagtgagggcatggcctagccagtccagcatcctcagtggagacgatgggcta
aaggagcgccctgcgtcgtccgctagccaggccagctacgtggtgaacgagcgcctacag
gagctggtcaagatgtttaaggagaggacagaaagggccaaagagaaactcatagaccca
gatcactctgatgatgacagtccaactgcctcccctgcgagagctccaacaccacctcct
gcacctccagaggagccgaaggaggaggagatagaggagcagcaacccaagcctagatta
tgctgcaaggtgacgcctcctcgctggatcagagctctgctgcactaccgcttccccgct
agcatcgaccccttcaccaatctggtctatgtgttgtggctgtttttcgtcaccttggcg
tggaactggaacatgtggcttatcccggtgcgctgggccttcccctaccagacccccagt
aacatctacctgtggctactcactgactatctgtgtgacctcatctacatcctggacata
ctggtcttccagccccgcctgcagtttgtccgcagtggagacatagtgtttgacaaaaag
gacatgagagtgaattacatgaaaaccttccggttcaagatggatgtcatcagtcttgtt
ccactggagttgttctattttaaaactgggatcaacccactcctacgcttcccacgacta
ctaaagataatgtctttctttgagttcaacgaccgtcttgagggcatcctgaccaaagcc
tacgtttacagagtgatccggaccaccacctacctgctgtactgcctgcactgtaatgcc
tgtctgtactactggggctctgcgtatgaaggtctgggctccacgcagtgggtctatgac
ggacagggcaacagttacatccgctgctactactttgctgtgaagaccctaatcaccatt
ggtggactgccggaccccacaacgctctttgaaatcatctttcagctgatcaactacttt
gtaggagtgtttgccttttccatcatgattggacagatgagagacgtggttggtgcagcc
acagcaggacagacgtactacagagcatgcatggacaacactgtcaaatacatggcctcc
taccgtatccctaaagacgtgcagaaccgggttaaaacctggtacaactacacctggcag
tcccagggcatgctggatgaacaggagcttctggtccagctcccagacaagatgaggctg
gacatcgctgtagatgtcaactatgacattgtcagtaaagtgtctctcttccagggttgt
gatagacagatgatctttgacatgctgaagagactgaggtctgttgtttaccttccaggg
gactatgtctgcaaaaagggtgaagttggacgggaaatgtacatcatcaaagccggagag
gtgcaggtggtgggcgggccagacgggaagactgtgtttgtcacgctgagggcggggtca
gtgtttggggaaatcagcttgctggcagtgggtggagggaacaggagaacagcaaacgtg
gtggctcatggcttcgccaacctgttcatcctggacaagaaggacctcaatgagattcta
gtgcattaccccgagtcccagaagctgctccgcaagaaggccaggaagatgctcacgaaa
gataagaagcctccgaaggagccggcccaggtgatccctcctcgaacggtcacacccaag
ctattcaaagctgctctggatgtggcacatcagaaaacaggcctcaaagggaccctcgcc
aagattaaggagaagatcaacaaatccagcgtttctctacagccctccatgtcctcctcc
ctgcctcccttgtctccagtctccagtctggacccagagcgcgaggctaacgccatgtca
ccaaccatagacagctccacgctgctctgccccgtctcccattgtcacggagatgagaca
ctctccaatgagcagggccaagtggaaggagaagttgcaggagagagtgggaagaagaaa
gaaaagagaaaggcatga
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