Salvelinus sp. IW2-2015 (Arctic char): 111965628
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Entry
111965628 CDS
T05762
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
salp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111965628
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111965628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111965628
04121 Ubiquitin system [BR:
salp04121
]
111965628
03400 DNA repair and recombination proteins [BR:
salp03400
]
111965628
Enzymes [BR:
salp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111965628
Spliceosome [BR:
salp03041
]
Complex B
Other components
Prp19 complex
111965628
Complex C
Prp19-CDC5 complex
111965628
Ubiquitin system [BR:
salp04121
]
Ubiquitin ligases (E3)
U-box type E3
111965628
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
111965628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Prp19
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_Aladin
NBCH_WD40
Beta-prop_WDR41
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
PEP5_VPS11_N
Beta-prop_SPT8
U-box
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_ACSF4
PROPPIN
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
eIF2A
B-prop_COPA_B_2nd
RMC1_N
Beta-prop_LRRK2
Cytochrom_D1
Tricorn_2nd
Nucleoporin_N
zf-Nse
Cep57_MT_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
111965628
NCBI-ProteinID:
XP_023845552
LinkDB
All DBs
Position
LG6.2:complement(1110820..1115618)
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGVDPMNSQPLSEEQLIDIKVSHP
IRPKAPSSTSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQNMPASQPAAGGAGGEPMEVSVQVGMTPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILCMDLCPSDTNKVLT
GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCI
QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGQVLTKVTDEAAGVALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTIALDNSYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFSDHSGLVT
GVAFGDNAQFLSSAGMDRSLKFXSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgcgcaatttccaatgaggtcccggagcacccttgcgtgtccccggtg
tctaaccaggtgttcgagcgccgactgatcgagaagtatatcgcagagaatggagtggat
ccaatgaatagccaaccactgtcggaagagcaacttatcgatataaaagtgtctcatcct
atccgaccaaaggctccctcttctaccagtatccctgccatactcaaggctctgcaagat
gagtgggatgcggtcatgttgcacagtttcactctgaggcagcagctgcagacgactcgc
caggagctctctcacgccctctaccagcatgacgcagcctgcagagtcattgctcgtctt
accaaggaggtcactgcagccagagaggccctggccacactcaaaccccaagccggattg
gtggcccctcagaatatgcctgcctctcagccagccgctgggggtgctggtggggaacca
atggaggttagtgtgcaggtgggaatgactccagagatcatccagaagcttcaagataag
gctactgtccttaccacagaaagaaagaagagaggaaagaccgtgccagaggagctggtc
agggctgaggatctgagcaaataccgccaagtggcttcccacgctggacttcacagtgcc
agtgtcccaggaatcctgtgtatggacctctgtccttcagacaccaacaaagtactcact
ggtggggctgataagaatgtggtggtatttgataagaaggaggagcagatcattgccacc
ctcaagggtcacaccaagaaggtcacctctgtcatctaccacccctcccagtctgtggtg
ttctctgcctctccagacagcaccatccgggtgtggtctgttactgggggcaactgtatc
caggtggtgcgagctcacgaggcgagcgtaaccgggctgtcacttcacgcaaccggggac
taccttctcagctcttccgaagaccagtactgggccttctcggatatccaaactggccaa
gtccttaccaaagtcacagatgaggctgctggtgttgctctgacttgtgctcagttccac
cctgacggtctgatcttcgggacgggaaccgccgactcccagatcaagatctgggatctg
aaggagcgcacaaacgtggccaacttccccggccactctggccctgtcacctccatcgcc
ttctctgagaacggatactacctggctacaggtgcccaggacagctctgtgaagctgtgg
gatctgaggaaactgaagaacttcaagaccatcgccctggacaacagctatgaggttaag
tctctggtgtttgatcagagtggtacrtacttggctgtgggtggatctgacatcagggtg
tacatctgcaagcagtggtcggaggtcctcaacttcagcgaccattctggcctggtgaca
ggggtggcgttcggagacaatgctcaattcctttcctccgctggaatggacagaagcctc
aagttcyacagcctgtag
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