Salvelinus sp. IW2-2015 (Arctic char): 111967538
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Entry
111967538 CDS
T05762
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
salp03015
mRNA surveillance pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111967538
09122 Translation
03013 Nucleocytoplasmic transport
111967538
03015 mRNA surveillance pathway
111967538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111967538
03041 Spliceosome [BR:
salp03041
]
111967538
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
111967538
Spliceosome [BR:
salp03041
]
Common components
Common spliceosomal components
Cap binding complex
111967538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
Jnk-SapK_ap_N
AAA_11
AAA_13
Vfa1
EMC3_TMCO1
GBP_C
RRF
FapA
tRNA_bind_2
PHM7_cyt
Motif
Other DBs
NCBI-GeneID:
111967538
NCBI-ProteinID:
XP_023848399
LinkDB
All DBs
Position
LG8:complement(16132342..16139552)
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AA seq
796 aa
AA seq
DB search
MSRRRHSDGDDGGQSHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANL
YTEALYLVRFLCDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYVVLSSLPWV
GKELYEKKDVEMDRLLNQIDGYLKRRLKTHVSMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHMPDCQYPMPRVIFRMFDYTDAPEG
PVMPGSHSVERFVIEDNLHNIIKSHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYMRLDTMNTTCIDRLLNWFSHH
LSNFQFRWSWDDWTDCLALDADKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFTALIPAD
PIFFYKYQDEANSALPGYAVAITVGNAIKNRASNEEILTVLKDVPNPNQEDDDDEGEGFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEILKVLTDCDEGKLHILRVVYEVWRNHPQM
ISVLVDKLIRTQIVDCAAVANWLFSPSMAHEFTRFYVWEILHSTIRKMNKHVQKIQKELE
EAKDKLERQQHKKQKDSGDEEDMEKNSEDEDGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMMLTEHLVRCETGSVDFSTPWYKNCIERLQQIFLMHHVTIQQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaagacggcacagtgacggagatgatggaggccagtctcacaaaagaaggaga
acgtcagagcccattgagattgaggatcgcctggaatcactgatatgtcgagtgggagaa
aagagtacctcttccctggaaagcaatttggaaggtcttgcaggtgtcttggaagccgac
ctccccaattacaaaaacaaaatcctccgcattttgtgtgctgtggctcgacttctacct
gagaagctgaccgtgtacacaacattagtgggccttctcaatgccaggaactacaacttt
ggcggggagtttgtggaggccatgattcgacaactcaaagagaccttgaaggccaacctg
tacaccgaagcgctttayctagtgcgcttcctctgtgacctggtgaactgccacgtgatt
gctgccccctccatggtggccatgtttgagaactttgttagtgtcactcaggaggaagat
gtgccacaggtgcgctcggactggtttgtctatgttgtactctccagtctcccctgggtt
gggaaggaactctatgagaagaaggacgtggagatggacaggctcctaaaccagattgat
ggttacctcaagaggcgactgaagactcatgtctccatgcttcaggtttggacagcagag
aagccacacccacaagaggagtacctggactgcctgtgggctcagatccagaagctgaag
aaggaccgctggcaggagcgccacatcctgcggccgtacatcgcctttgacagcgtgctg
tgtgaggccctgcagcacaacctgccacccttcaccccgcctgcccacatgcccgactgc
cagtaccccatgccccgcgtcatcttccgcatgttcgactacaccgatgcccccgagggt
cccgtcatgccaggcagccactctgtggagaggtttgtgattgaggataaccttcacaac
atcatcaagtcccactggaaagagaggaagacctgtgctgcgcagttgctcagctatcca
gggaaaaacaagatcccactcaactatcacattgtggaggtgatctttggagagctcttc
cagctgccttgtcccccccacatcgacgtcatgtacactacactgctcatcgagctctgc
aagctgcagccaggctccctgcctcaagttttggcccaagccacagagatgatgtacatg
agactggacactatgaacactacttgcatagaccgactcctcaactggttctcccaccat
ttgagtaactttcagttccgatggagctgggacgactggacggactgtttagcgctggat
gcagacaagcccaagcccaagtttgtcaaggaggtactggagaaatgcatgaggctctcc
tatcatcagcggatagtggacattgtcccgcccactttcacagccctcatcccagccgac
cccatcttcttttacaaataccaagatgaggccaacagtgcactgccaggctatgccgtg
gccataacggtgggcaacgccatcaagaaccgggcctccaacgaggagatcctcaccgtg
ctcaaagacgtgccaaaccccaaccaggaagatgacgacgatgagggtgagggsttcaac
cccctaaagatagaggtgttcctgcagaccctcctccatctggctgccaagtccttcagc
cactccttcagtgccctggccaagttccatgagattctgaaggtcctgacggactgtgac
gagggcaagctacacatcctccgggtggtctacgaggtctggaggaaccacccacaaatg
atctctgtgctggtggacaagttgatccgtacacagattgtggactgtgcagctgtagcc
aactggctcttctccccaagcatggctcatgaatttaccaggttttacgtgtgggagatt
ctgcactccaccatccgtaagatgaacaaacacgtccagaagattcagaaagagctggag
gaggccaaggataagctggagaggcaacagcataagaagcagaaggacagtggcgatgag
gaggacatggagaagaacagtgaggatgaggacggtcagctggaggagcagatcgagcgt
ctgcaggagaaggtggagtcggcccagagtgagcagaagaacctcttcctggtcatcttc
cagcgcttcatcatgatgctgacggagcacctggtgcgctgcgagacaggcagtgtggac
ttcagcacgccctggtacaagaactgcatcgagaggctgcagcagatcttcctcatgcat
catgtgaccatccagcagtacatggggaccctggagaacctgctgttcactgccgagctt
gaccaccacatcctagctgtttaccagcagttctgtgccctgcagctctga
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