Salvelinus sp. IW2-2015 (Arctic char): 111979118
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Entry
111979118 CDS
T05762
Name
(RefSeq) protein SSXT isoform X1
KO
K15623
protein SSXT
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111979118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
salp03036
]
111979118
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111979118
GBAF(ncBAF) complex
111979118
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSXT
Motif
Other DBs
NCBI-GeneID:
111979118
NCBI-ProteinID:
XP_023865180
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Position
LG19:16893715..16918587
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AA seq
416 aa
AA seq
DB search
MSVAFAPHRQRGKGDITPAGIQKLLDENNQLIQCIMDFQSKGKTAECSQYQQMLHRNLVY
LATIADSNQNMQSLLPAKCDSPTPPEVKLEPPTQNMPMGPGGMNQSGAPGPQPPHGHNMP
SEGMVSGGPTAPHMQNQMNGQMPGPNHMPMQGPGPGPNQPPNMPGSGAMNMPPSSHGSMG
GYNHAVPSSQGMPAQGQMNMPQGQGPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPPG
GGGQHYQGQQNPMGMMGQVNPGNHVMGQRPMPPYRPPQQGPPQQYPGQEDYYGDQYSHAG
QGASEERDPAANQQSPYEKDHGNAQYGQQQEAYQQGPPQQQGYPPQQQYPGQQGYPGQQQ
GYGPSQGAPGQYPQGYPQGQGQQYGAYRGPQPGPPQAQQQRPYPGYDQGQYGNYQQ
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggcgtttgcacctcacagacaacgtggaaagggtgatataacacccgctgga
attcaaaagttactggatgagaacaatcagctgattcaatgtataatggatttccagagc
aaaggaaagaccgcagaatgttcacagtaccaacaaatgctccacagaaatttggtttac
ctggccacgatagcagactccaatcagaacatgcagtctctgctccctgctaagtgtgac
tcccctactcctccagaggtaaagcttgaaccacccactcagaacatgcccatgggccct
ggtgggatgaatcagagtggagcgcctggcccccagcccccccacggacacaacatgccc
tcggagggcatggtcagcggcggccccactgccccacacatgcagaaccagatgaacgga
cagatgcctgggcccaatcacatgcccatgcagggccccgggcctggccccaaccagcct
cccaacatgcccggcagtggcgccatgaacatgccccccagcagccacggctccatgggc
ggctacaaccacgctgtgccctcgtctcagggcatgcctgctcagggccagatgaacatg
ccccagggacagggacccatgggcaactacggcccccggcccaacatgaacatgcagcct
aaccaaggccccatgatgcaccagcagcctccctcccagcagtacaacatgccccctggg
ggtggtgggcagcactaccagggccagcagaatcccatgggcatgatgggtcaggtcaac
ccaggcaaccatgtcatggggcagaggcccatgcccccttacagacccccacagcaagga
ccccctcagcagtacccagggcaggaagactactatggggaccagtacagtcacgcagga
cagggagcttcagaagagcgagacccagcagccaaccaacagtccccctatgaaaaagat
catggaaatgcccagtatggccagcagcaggaggcctaccagcaaggtcctcctcaacag
cagggctaccccccacagcagcagtaccccggacagcagggctatcctggacagcaacag
ggttatggtccatcccagggagctccaggccagtacccccaaggttacccccagggccag
gggcagcagtacggggcctaccggggcccccagcccggcccccctcaggcccagcaacaa
cgcccatacccaggctacgaccagggtcaatatggaaattaccagcaatga
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