Candidatus Syntrophocurvum alkaliphilum: SYNTR_0518
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Entry
SYNTR_0518 CDS
T06326
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
salq
Candidatus Syntrophocurvum alkaliphilum
Pathway
salq03410
Base excision repair
salq03430
Mismatch repair
salq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
salq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SYNTR_0518
03430 Mismatch repair
SYNTR_0518
03440 Homologous recombination
SYNTR_0518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salq03400
]
SYNTR_0518
DNA repair and recombination proteins [BR:
salq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SYNTR_0518
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SYNTR_0518
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SYNTR_0518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Helicase_C
DEAD
Motif
Other DBs
NCBI-ProteinID:
QGT99111
UniProt:
A0A6I6DF97
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All DBs
Position
517303..520125
Genome browser
AA seq
940 aa
AA seq
DB search
MNFEHIWNLRKNNRDAAESLSKKLNISSTLASLLIHRGITKEKDAQMFLYGTIENLSDPL
LLSGIQEAVKRIENAIRNKEKVVIYGDYDVDGVCSIVLLKECFRLLGHEVDYYVPNRFTE
GYGLNIEAIRHLNDQKYELIITVDCGISSLQEVELANELGIDVIITDHHTPSEILPEALS
IINPKLDNEQKEVVDLAGVGVAYYLARALCKNKVSDEELYRWLDLVALATVADIVPLLRD
NRLLVKAGLNVMQDTNRVGLKALIDKCGLTDKVLTSWHIGFILAPRLNSAGRLENAKTSI
ELLLCDDYEKAKFIADNLCTMNNNRKTIEEQIYKEAVFRINNNVDLENEPAIILADDNWH
HGVLGIVASRLVDRFNLPTILISWEGEEGKGSGRSVNNINLHSSLAMCSEHLEKYGGHKM
AVGLSIKKVKFNVFKQKIYSIIDESRSEDQKYKTIDIDAELNTEQITPQLIDEIRLLEPF
GEKNSFPIFVLRNTEVYDQDLVGKNKEHIKFKIGLNKVDGIGFYKAEFHSLPTHLTTVDI
VGELNENEFRGNKNIQIKVLDMKSSYIPDGFNYTKVNQIIENTVNEIDNGSPVLYVYPTY
RSLLKHKHLWKNYLRSNKLIELHGNTTYYSRKRTEEQLVNEEPKVFLTTTAYLEYYLKKR
QLPSVLKYLVFIWQKVDLDKWLNLQKRYKIDTIDFPLANFSWQPKKPLIEPTNYTIIYAN
RSNTISKIKEKFKNVNIEAGVKENLKRKVIRQRFISSQPSILLVDGSYTDKTIETKNIKE
IFLANAPFGEYELMSVADQMCATSEMEVVVLFSDNEVNLNKNYLNRKYPNHDLVKNALSY
FKYRSDLLINEDKDSLAQKMANYMKCDFTVFDLIPILNILMDLGLCHVEKNGSIISIKFF
KSVEAVLNLYDSPYYLEGIAEKEAFCKFEKVLNNVIKWCD
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgaacatatttggaatttaagaaaaaataatcgagatgctgcagaaagctta
agcaaaaaactaaatatttcatctactttagcatcattattaattcatagaggaataaca
aaagaaaaagatgcacaaatgtttttatatggaaccattgaaaacttatcagatccatta
ttattaagtggaatacaagaagcagtaaaaagaattgaaaatgcaataagaaataaagaa
aaagttgttatttatggtgattatgatgttgatggggtttgcagtatagttttactcaag
gaatgttttaggctgttaggacatgaagtggactattatgttcctaatagatttacagaa
gggtatggtttgaatattgaagccataagacatttaaatgatcaaaaatatgagcttatt
ataacagttgattgtgggattagctctttacaggaagttgaactagcaaatgaattaggg
attgatgttattattacagatcatcacaccccatcagaaatacttccagaggcacttagt
ataataaacccaaaattagataatgaacaaaaagaggtggttgatttagctggagttgga
gtagcttattatttggctcgagcactatgtaaaaacaaggtatcagatgaagaactttat
aggtggcttgatttagttgctttagcaacagttgcagatattgttccattattaagagat
aatagactattagtaaaagccggactaaatgttatgcaagacactaatagagttggctta
aaagctttaattgataaatgtggacttacagataaggtgttaactagttggcatataggt
tttatacttgcacctagattaaattctgctggtagattagaaaatgctaaaacaagtata
gaattgctattatgtgatgattatgaaaaagcaaagttcatagcggataacctatgtact
atgaataataatcgtaagaccattgaagagcaaatttataaagaggcagtatttcgtata
aataataatgtagatttagaaaatgaacctgcaataattttagcagacgataattggcat
catggggttttgggcattgtagcttcaagacttgtagatcgcttcaatcttcccacaata
ctaatatcttgggaaggagaggaagggaaagggtctggtagaagtgtaaataatataaac
ttacatagctcactggcaatgtgctctgaacatttggagaagtatggtggccataagatg
gctgtcggcctaagtattaaaaaagtcaaatttaatgtatttaaacaaaaaatttattct
attatcgatgaaagtagaagtgaagatcaaaaatataaaacaatagatatagatgcagag
ttaaatacagagcaaattacaccccagcttatagatgagatacgtttacttgagcctttt
ggtgaaaaaaattcatttcctatatttgttctaagaaacacggaagtatatgatcaagac
ttagtaggtaagaataaggagcatataaaatttaaaattggtctaaataaagttgatgga
attggcttttataaggctgaatttcatagtttacctacacaccttacaacagtagatatt
gtaggtgaactgaatgaaaatgagtttagaggtaataaaaacattcaaataaaagtttta
gatatgaaaagtagttatatacctgatggttttaattataccaaggtaaaccaaattata
gaaaatacagttaatgaaattgataatggtagtccagttctatatgtttatcctacatat
agaagcttattaaaacataaacatctttggaaaaactatttacgttctaataaattaatt
gaactgcatggtaatactacatattactctagaaagagaaccgaagaacaattagttaat
gaagaaccaaaggtttttttaactactacagcttatttagaatattatttaaaaaaaaga
caactaccttctgttcttaaatatttagtatttatttggcaaaaggtagatttggataaa
tggcttaacttacaaaaaaggtataaaattgatactatagattttcctttagccaatttt
tcatggcaacccaaaaaaccattgatagaaccaacaaattatacaataatttatgcaaat
agaagtaatactattagtaaaattaaggaaaaatttaaaaatgtaaatattgaagctggt
gtgaaagaaaacttgaaaaggaaagttatacggcaacggtttatttcatcccagccaagt
attcttcttgtagacggaagttataccgataaaacgatagaaactaaaaatattaaagaa
atatttttagcaaatgcaccttttggtgaatatgaattaatgtcagtagctgatcaaatg
tgtgctacttctgaaatggaagtagtcgttttgttttcagataatgaagttaacttaaat
aaaaactatcttaatcgaaaatatccaaaccatgatcttgtaaaaaatgccttaagttac
tttaagtatcgttcagacttattaattaatgaagataaagatagtttagctcaaaaaatg
gctaactacatgaagtgtgatttcacagtatttgatttaattccaatacttaacatatta
atggatctagggttgtgtcatgtcgaaaaaaacggtagtattatttcaataaagtttttc
aaatctgttgaagcggttctaaatctgtacgattcgccatattatcttgagggtatagct
gaaaaagaagctttttgcaaatttgaaaaagtgttaaataatgtaataaaatggtgtgat
taa
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