Salinivibrio sp. YCSC6: E8E00_00650
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Entry
E8E00_00650 CDS
T05946
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
saly
Salinivibrio sp. YCSC6
Pathway
saly03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
saly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E8E00_00650 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saly03021
]
E8E00_00650 (rpoC)
03400 DNA repair and recombination proteins [BR:
saly03400
]
E8E00_00650 (rpoC)
Enzymes [BR:
saly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E8E00_00650 (rpoC)
Transcription machinery [BR:
saly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E8E00_00650 (rpoC)
DNA repair and recombination proteins [BR:
saly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E8E00_00650 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QCF34808
LinkDB
All DBs
Position
I:143219..147433
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLKFLKAQHKTEEFDSIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFESYVVIEPGMTNLERGQMLSEEQYLDALEEWGDEFDARM
GAEAVKALLANMDLSVETEQMREELEETNSETKRKKITKRLKLVEAFLQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKVNGKGEGMYLAGPGEAEKVYRTG
HAELHTRVKVRIKQVDIDEMGARTEKVSLVDTTVGRAMLWTIVPEGLSFDLVNQPLGKKQ
ISNLLNTCYRKLGLKDTVIFADQIMYTGFAYAALSGTSVGIDDMVIPQAKYDLIEAAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANEQVAKAMMDNLSNETVINRDGEEETQKSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTETDCGTEGGIHMMAVIEGGDVKEALRERVL
GRVVAEDVLKPGTDEVLAPRNTLLDEKWCDILEQHSVDKVKVRSVVTCETDFGCCAHCYG
RDLARGHLVNHGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAENNIQVKNKGSMHL
HNVKSVTNSDGKLVITSRASEMTIVDEFGRTKESYKVPYGALLSKKDGEAVEAGDVVANW
DPHTMPIITEVEGSVRFVDMIDGVTMQRQTDELTGLSSIVVMDASERPSSGKDKRPAVKL
VDAQGNDMMIPGTDMPVQYFLPGNAIVQLDDGANVGIGDTLARIPQESGGTKDITGGLPR
VADLFEARKPKEPAILAEITGTVSFGKETKGKRRLIITPEEGQAYEEMIPKWRQLNVFEG
EKVEKGDVIADGPESPHDILRLRGVHAVAEYITNEVQDVYRLQGVKINDKHIETIVRQML
RKVTIKSAGDTDFLEGEQVEYSRVTIANRELEAEGKRPATYGRDLLGITKASLATESFIS
AASFQETTRVLTEAAVAGKRDDLRGLKENVIVGRLIPAGTGFAYHKDRQAKRAEPEQPVA
PQIDAEQASQDLAALLNAGLNDDN
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcacagcataagaccgaagaatttgattcgatc
aaaatcggtctagcctcaccagacatgatccgttcatggtcgtttggtgaagtgaaaaag
ccagaaaccatcaactaccgtacctttaagcctgagcgtgacggtttgttctgtgcacgt
atcttcggcccggtcaaagactacgaatgtctttgtggtaaatacaagcgcctgaagcac
cgtggcgtcatttgtgaaaaatgtggcgttgaagttactcagaccaaagtgcgccgtgag
cgtatgggtcacattgagctggcttcacctgttgcccacatttggttcctgaagtcgcta
ccatcacgcattggtttgctgatggacatgccgctacgtgacatcgagcgtgtgctttac
tttgaatcctacgtggtgattgagccaggtatgaccaaccttgaacgtggtcagatgctg
tctgaagagcagtacttggacgcgttggaagagtggggcgacgaatttgatgcgcgcatg
ggcgcagaagcagtgaaagcactgctggcgaacatggatctgtcagttgagacagagcaa
atgcgtgaagagttggaagaaaccaactctgaaaccaaacgtaagaagatcactaagcgt
ttgaagctggtggaagccttcttgcaatcaggtaacaatcctgagtggatgatcctgact
gtgctgcctgtgttgccgccagacttgcgtccattggtaccgttggacggtggtcgtttt
gcgacctcggatctgaacgacctttaccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgcctgcttgatcttgctgcaccagacatcatcgtgcgtaacgaaaaacgcatgctgcaa
gagtctgtggatgccctgcttgataacggtcgtcgtggtcgtgccatcactggctcgaac
aagcgtccgcttaaatcgctggctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactctggccgttcggtaatcaccgtaggtccatac
ttgcgtctgcatcagtgtggtctgccaaagaaaatggcactagagctatttaaaccgttt
atctacggcaagcttgagactcgtggtctcgcgaccaccatcaaagccgccaagaagatg
gttgagcgcgaagaagctgtggtgtgggatatcttggatgaagtcatccgtgaacaccct
gtcctgctaaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaacctgtg
cttatcgaaggtaaagcgattcagctacacccattggtgtgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgttgatgatgtcgaccaacaacatcctatcgccagcatccggtgatcctatcatc
gtaccgtctcaggacgtggtactgggtctttactacatgacccgtgagaaggtgaacggc
aaaggcgaaggcatgtacttggcaggcccaggcgaagccgaaaaggtttaccgtactggc
catgctgaactgcatacgcgtgtaaaagtgcgtatcaagcaagttgatatcgatgagatg
ggcgctcgtaccgagaaagtatcactggttgataccaccgtcggtcgtgccatgctatgg
accatcgtaccggaaggcctgtcatttgacttggttaaccagccgttgggtaaaaagcaa
atctctaacttgctcaacacctgttaccgtaagctgggtctgaaagacaccgttattttt
gctgaccaaatcatgtacaccggttttgcctacgcggcactgtcgggcacctctgtcggt
atcgacgatatggtgatcccacaagccaagtacgacttgatcgaagcagcagaagcagaa
gttgcggaaatccaagagcagttccaatctggtctggttaccgcgggcgaacgttacaac
aaagtgatcgatatctgggctgcagcgaacgaacaagttgcaaaagccatgatggataac
ctgtctaacgagacagtgattaaccgtgacggcgaagaagaaacccagaagtcgttcaac
agtgtttacatgatggccgactcaggcgcacgtggttctgctgcacagattcgtcagcta
gccggtatgcgtggtctgatggcgaagccagatggctctatcatcgaaacgccaatcacg
gcgaacttccgtgaaggcctgaacgttcttcagtactttatctctacgcacggtgcgcgt
aagggtcttgcagataccgcattgaagacagcgaactcaggttacctgactcgtcgtctg
gttgacgtagcccaagacgtggtcgtgaccgaaactgattgtggcaccgaaggcggtatc
cacatgatggcggttatcgaaggcggtgacgtgaaagaagcactgcgtgagcgtgtgctg
ggtcgtgtcgtcgctgaagacgtactgaagccgggtactgacgaggtgcttgcaccacgt
aacaccctgctggatgagaagtggtgtgacattcttgagcagcactctgtcgataaggta
aaagtacgctctgtcgtaacctgtgaaactgacttcggttgttgtgcacactgttacggt
cgtgatttggcacgtggtcacttggtgaaccacggtgagtctgtgggcgttatcgcggca
cagtctatcggtgagccaggtacacagctgaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggcggcagaaaacaacattcaggtgaagaacaaaggttctatgcacctg
cacaatgtgaaatccgtgaccaatagcgacggtaagctagtgattacctcgcgtgcgtca
gagatgaccattgttgatgagttcggtcgtacgaaagaaagctacaaagtgccttacggt
gccttgctgagcaagaaagatggtgaagcggttgaagctggcgacgttgttgctaactgg
gatccgcacaccatgccaatcatcaccgaagtagaaggtagcgttcgcttcgtagacatg
attgatggcgtcaccatgcagcgtcaaactgatgaactgaccggcctgtcttctatcgtg
gtaatggatgcctctgagcgcccatcatccggtaaagataagcgtcctgcagtgaaactg
gttgatgcgcaaggcaatgacatgatgatcccaggcactgatatgccggttcaatacttc
ttgccgggtaacgcaattgttcagctggatgacggcgcgaacgttggcattggtgacacc
ttggcgcgtatcccgcaagaaagcggcggtaccaaggatatcaccggtggtctgccacgt
gttgctgacctgttcgaagcgcgtaagccaaaagagccagctatcttggcggagatcaca
ggtactgtttccttcggtaaagaaaccaaaggtaaacgtcgcctgatcatcaccccagaa
gaaggccaagcctacgaagagatgattccaaaatggcgtcagctcaacgtattcgaaggt
gaaaaagtcgagaaaggtgatgtgatcgctgatggtccagaatcaccgcacgacatcttg
cgtctgcgtggtgttcacgcagtggctgagtacatcaccaacgaagttcaagacgtttac
cgtttgcaaggcgttaagatcaacgataagcacatcgagaccatcgtgcgtcagatgctg
cgtaaggtgaccattaagtctgcaggtgataccgacttcttggaaggcgagcaagtggaa
tactcacgtgtgaccattgctaaccgtgaacttgaagcggaaggcaagcgtccagcgacc
tatggtcgtgacctgttgggtatcactaaagcctcgttggcgactgagtcattcatctca
gcggcatcgttccaggaaaccacgcgcgtgctgacagaagcagccgtagcgggtaaacgt
gatgacttacgtggtctgaaagagaacgtgattgtgggtcgtttgatcccagccggtact
ggtttcgcgtatcataaagatcgtcaagccaaacgtgctgagcctgaacagcctgttgca
ccacagattgatgctgagcaagcctcacaagatctggcagcactgttgaatgcaggactg
aacgacgacaattaa
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