Streptomyces ambofaciens: SAM23877_4524
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Entry
SAM23877_4524 CDS
T04055
Symbol
rpoA
Name
(GenBank) RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
samb
Streptomyces ambofaciens
Pathway
samb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
samb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAM23877_4524 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
samb03021
]
SAM23877_4524 (rpoA)
03400 DNA repair and recombination proteins [BR:
samb03400
]
SAM23877_4524 (rpoA)
Enzymes [BR:
samb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAM23877_4524 (rpoA)
Transcription machinery [BR:
samb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAM23877_4524 (rpoA)
DNA repair and recombination proteins [BR:
samb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAM23877_4524 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
HHH_5
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
AKZ57569
UniProt:
A0A0K2AX28
LinkDB
All DBs
Position
4776856..4777878
Genome browser
AA seq
340 aa
AA seq
DB search
MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
HEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHN
PDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEA
TRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTD
AALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAK
LAGMGLALKDSPPGFDPTAAADAFGADDDADAGFVETEQY
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgctcagcgtccctcgttgaccgaagaggtcgtcgacgagttccgctcccgg
ttcgtcatcgagccgctggagccgggcttcggctacaccctcggcaactccctccgccgc
accctcctctcgtcgatccccggcgctgctgtcaccagcatccgcatcgacggtgtcctg
cacgagttcaccaccgtgccgggcgtcaaggaggacgtcaccgacctgatcctcaacatc
aagcagctggtcgtctcctcggagcacgacgagccggtcgtgatgtacctgcgcaagcag
ggcccgggtctggtcaccgccgccgacatcgcgcccccggccggtgtcgaggtgcacaac
cccgacctcgtcctcgccacgctcaacggcaagggcaagctggagatggagctgaccgtc
gagcgcggtcgcggctacgtctccgccgtccagaacaagcaggtcggtcaggagatcggg
cgcatcccggtcgactcgatctactcgccggttctgaaggtcacgtacaaggtcgaggcc
acgcgtgtcgagcagcgcaccgacttcgacaagctgatcgtcgacgtcgagacgaagcag
gccatgcgtccgcgcgacgccatggcgtcggccggcaagaccctggtcgagctgttcggt
ctcgcccgcgagctgaacatcgacgccgagggcatcgacatgggcccgtccccgacggac
gccgcgctcgccgccgatctggccctgccgatcgaggagctggagctcaccgttcggtcg
tacaactgcctcaagcgcgagggcatccactccgtgggtgagctcgtggcccgttccgag
gcggacctgctcgacatccgcaacttcggtgcgaagtcgatcgacgaggtcaaggccaag
ctcgcgggcatgggcctggcgctgaaggactcgcctcccggattcgacccgaccgccgcc
gcggacgccttcggcgccgacgacgacgcggacgccggtttcgtggagaccgagcagtac
tga
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