Sphingobium amiense: SAMIE_1018250
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Entry
SAMIE_1018250 CDS
T06684
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sami
Sphingobium amiense
Pathway
sami03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SAMIE_1018250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sami03400
]
SAMIE_1018250
Enzymes [BR:
sami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMIE_1018250
DNA repair and recombination proteins [BR:
sami03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAMIE_1018250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
PriA_C
ResIII
Helicase_C
PriA_CRR
zinc-ribbons_6
AAA_30
zf_Rg
SLFN-g3_helicase
Rubredoxin_2
zinc_ribbon_15
Motif
Other DBs
NCBI-ProteinID:
BBD98324
UniProt:
A0A494W152
LinkDB
All DBs
Position
2130885..2133053
Genome browser
AA seq
722 aa
AA seq
DB search
MSRARVLLLNAALGPLDYRVPHGMRVEPGSIVVAPLGPRQLIGVVWEENSFPQVETVGDN
RLRNLLEVVDAPPIPEPLRRLIEWTADYYLSPPAAVLRMALSSMSALEGARTVIEYKATG
AVPERMTEQRAQALERIGERQGLIRELAMIGGVSDAVIRGLVRQDIFEAVEVSVDTPFPT
PDPDHAPPALSEAQAAAAGQMADAVRSGDFAPFLLDGVTGSGKTEVYFEAIAAAIRAGRQ
VLVLLPEIALTEPFLERFEKRFGTIPVNWHSGLRQSERRRAWRAIASGQAQVMVGARSAL
FLPYPKLGLIVVDEAHEASFKQEDGVHYHARDVAVMRGLIEKFPVILASATPAIETRHQV
ELGRYAEIRLPSRYGGAEMPDIHGINLLTDPPERGRWIAPELVKAIDETRAKGEQSLLFL
NRRGYAPLTLCRHCGYRFQCPNCTAWMVEHRLTHRLACHHCGHVTPAPRHCPECKEEDSL
VACGPGVERIADEVKALWPDARTAIVTSDTLWSPAKVADFVKSVEAGDIDIIVGTQLVTK
GYHFPNLTLVGVIDADLGLEGGDLRAAERTFQQIVQVAGRAGRGQKPGRVFIQTRMPESE
VIKALIDGDTERFYEVETENRRRANAPPFGRFAAIIVSSEDADEAAQTARLIGKSAPAIE
GMRVYGPAPAPLAVLRGRHRHRLLIHASRQVDVQGAIREWLGNIAWKSGTRVAVDVDPYS
FM
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcgcccgtgtcctcctgctgaacgctgccctcggtcccctcgactatcgcgtg
ccccacgggatgcgcgtggagccgggcagcatcgtcgtcgcgccgctgggtccgcgccag
ttgatcggcgtggtgtgggaggagaacagcttcccgcaggtcgagacggtgggcgacaac
cggctgcgcaacctgctggaggtggtggacgcgccgccgattccggaaccgctgcggcgg
ctgatcgaatggacggcggactattatctctcgccgcccgccgccgtgctgcggatggcg
ctttcgtccatgtccgcgctggagggcgcgcggacggtcatcgagtataaggcgaccggc
gcggtgcccgagcgcatgaccgagcagcgggcgcaggcgctggagcggatcggcgagcgg
caggggctgatccgtgagctggcgatgatcggcggagtgagcgacgcggtgatccgcggc
ctcgtcaggcaggacatcttcgaggcggtggaggtgagcgtggatacgccctttcccacg
cccgatccggaccatgcgccgcccgccctgtcggaggcgcaggcggcggcggcggggcag
atggcagatgcggtgcggagcggggacttcgcgcccttcctgctcgacggcgtcaccggg
tcgggcaagacggaagtctatttcgaggcgattgcagcggcgatccgcgcggggcggcag
gtgctggtgctgctgcccgagatcgcgctgacggagcctttcctcgaacggttcgagaag
cgtttcggcacgattcccgtcaactggcacagcggccttcggcagagcgagcggcggcgg
gcgtggcgcgccatcgcgagcgggcaggcgcaggtgatggtaggcgcgcgctcggcgctg
ttcctgccctatccgaagctcggcctcatcgtcgtggacgaggcgcatgaggcgagcttc
aagcaggaggatggcgttcactatcacgcgcgcgacgtggcggtgatgcgcggcctgatc
gagaaattccccgtcatcctcgcgtccgccacccccgccatcgagacgcggcatcaggtg
gagctgggccgctatgcggagatcaggctgccgtcgcgctatggcggggcggagatgccg
gacattcacggcatcaacctgctgaccgacccgcccgagcggggccgctggatcgcgccc
gaactggtcaaggccatcgacgagacgcgggcgaagggggaacagagcctcctcttcctt
aaccggcgcggctatgcgccgctgaccttgtgccgccattgcggctatcgcttccagtgc
cccaattgcacagcgtggatggtcgagcatcggctgacccaccggctcgcctgccatcat
tgcgggcatgtgacgccagcgccccgccattgcccggaatgcaaggaggaggattcgctg
gtggcctgcggccccggcgtcgagcggatcgcggacgaggtgaaggcgctgtggcccgac
gcgcgcaccgccatcgtcacctccgatacgctctggtcgccggcaaaagtcgcggatttc
gtgaagtcggtggaagcgggcgatatcgacatcatcgtcggcacgcagctcgtcaccaag
ggctatcatttcccgaacctgacgctggtgggcgtgatcgacgccgatctggggctggag
ggcggcgacctgcgcgcggcggagcgcacattccagcagatcgtgcaggtggcggggcgc
gccgggcgggggcagaagccgggccgcgtcttcatccagacgcggatgcccgagagcgag
gtcatcaaggcgctgatcgacggggataccgagagattctacgaggtcgagacggagaac
aggcgacgcgcgaacgccccgcccttcggccggttcgccgcgatcatcgtgtcgagcgag
gatgcggacgaggccgcgcagaccgcgcgcctgatcggcaagtccgcgccggcgatcgag
gggatgcgggtctacggccccgcccctgctccgctggcggtgctgcgggggcggcaccgg
cataggctgctgatccacgccagccgacaggtcgacgtgcagggcgcgatccgggaatgg
ctgggcaatatcgcctggaaatcgggcacgcgggtggcggtggacgtcgatccctacagc
ttcatgtga
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