Sandaracinobacteroides saxicola: H3309_08570
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Entry
H3309_08570 CDS
T06739
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sand
Sandaracinobacteroides saxicola
Pathway
sand03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sand00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H3309_08570 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sand03021
]
H3309_08570 (rpoB)
03400 DNA repair and recombination proteins [BR:
sand03400
]
H3309_08570 (rpoB)
Enzymes [BR:
sand01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H3309_08570 (rpoB)
Transcription machinery [BR:
sand03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H3309_08570 (rpoB)
DNA repair and recombination proteins [BR:
sand03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H3309_08570 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
KorB
Motif
Other DBs
NCBI-ProteinID:
QMW21484
UniProt:
A0A7G5IDP2
LinkDB
All DBs
Position
complement(1716594..1720751)
Genome browser
AA seq
1385 aa
AA seq
DB search
MATQPVNPVSKLQPAPRFRSTRRVRKMFGKIGEVVQMPNLIEVQRESYEQFLRSRPADGY
VSGLEKTLRSVFPIRDFAGTAELDFVDYELEDPKFDIEECRQRGMTYAAPMRVTLRLIVF
EVDADTQNRSVVDIKEQDVYMGDMPLMTANGTFVINGTERVIVSQMHRSPGVFFDHDRGK
THSSGKFLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLNSEEILNA
FYKTVRFDRAPKGGWQMPFVAEQWRGVKPAFDVVNAETGELLFAEGQKITPRAAKKAQTD
GVRTLMVPNDEILGRYAAFDLINEKTGEIYIESGEEVSQEALDKLDAAGFSHLELLDIDH
VNVGPWMRTTLMVDKARNADVPRDQALSDIYRVMRPGEPPTRETAEALFGGLFFDAERYD
LSDVGRVKMNMRLGLDAPDDLRTLRREDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSV
GELLENSYRVGLLRMERAVKERMSSVDISTVMPNDLINAKPAVAAVREFFGSSQLSQFMD
QTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLA
TFSRVNKYGFIETPYRKVIDGKLTDEVVYLSAMEEAKHTIAQANVATNADGSFADELVSA
RAAGEFLIARREDITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAE
APFVGTGMEATVARDSGAAIAARRGGIVDQVDAGRIVIRATEDVQPGQSMVDIYTLMKFQ
RSNQNTCINQRPLVTVGDVVAKGDIICDGPSTQYGELALGRNALVAFMPWNGYNFEDSIL
INERIVKEDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEV
EPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGVAGTVVEVRVFNRH
GIDKDERALANEREEIDRLEKDAADERAILDRATYAGLKAMLLGQAVVTGPKGVKKGAII
DEALLEEFPRREWWKLGVVDDGVQAGLEASKAQWDAAQASIQARLDDRKDKLQRGDELPP
GVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPSEDMPFLEDGTPVDLVLNPLGVP
SRMNVGQIFETHLGWAARGLGRQISMMLEDIHAKGQRLAADDIAGVRGKLKSIYGAQTDV
DAMDDDAVIGMATDLAVGVPMGTPVFDGAREADVSDMLELAGLDSSGQVELFDGRSGEAF
DRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAY
GAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFESNIPESFNVLVKEMKSLSLNIELNN
TVAAE
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcgacccagcccgtaaatcccgtgagcaagttgcagcccgccccccggttccgctcg
acgcggcgggtgcgcaagatgttcgggaagatcggcgaagtggtgcagatgccgaacctg
atcgaggtgcagcgcgagagctatgagcagttcctgcgctcgcggccggcggatggctat
gtgtcgggcctggagaagacgctgcgcagcgtgtttccgatccgcgatttcgccgggacg
gcggagctggatttcgtggattatgagctggaggacccgaagttcgacatcgaggagtgc
cggcagcgcggcatgacctatgcggcgccgatgcgggtgacgctgcgcctcatcgtgttc
gaggtggatgccgacacgcagaaccgctcggtcgtggatatcaaggagcaggacgtctac
atgggcgacatgccgttgatgacggcgaacggcaccttcgtgatcaacggcacagagcgg
gtgatcgtgagccagatgcaccgctcgcccggcgtgttcttcgaccatgaccgcggcaag
acgcacagcagtggcaagttcctgttcgcggcgcgggtgatcccctatcgcggcagctgg
ctggatttcgagttcgacgcgaaggacatcgtgaacgtccgcatcgaccggaagcgcaag
ctgccggtgacggcgctgctctatgcgctggggctgaacagcgaggaaatcctgaacgcc
ttctacaagacggttcggttcgaccgggcgccgaagggcggctggcagatgccgttcgtg
gccgagcagtggcgcggggtgaagccggcgttcgacgtggtgaatgccgagaccggcgag
ctgctgttcgccgaggggcagaagatcacgccgcgcgcggcgaagaaggcgcagaccgac
ggcgtcaggacgctgatggtgccgaacgacgagatcctgggccgctatgccgcgttcgac
ctgatcaacgagaagacgggtgaaatctatatcgaatccggcgaggaggtgtcccaggag
gcgctcgacaagctggacgccgcggggttcagccatctggagctgctggacatcgaccat
gtcaatgtcgggccgtggatgcgcacgacgctgatggtggacaaggcgcgcaacgccgac
gtgccgcgcgaccaggcgctttccgacatctatcgcgtgatgcgccccggggaaccgccg
acgcgggagacggcggaggcgctgttcggcgggctgttcttcgacgcggagcgctatgac
ctgagcgatgtcggccgggtgaagatgaacatgcggctggggctggatgcgcccgacgac
ctgcggacgctgcggcgggaggatatcctggcggtggtgaagacgctggtggacctgaag
gacggcaagggcgagatcgacgacatcgataacctgggcaaccggcgcgtgcgatcggtg
ggcgagctgctggagaacagctatcgcgtgggcctgttgcggatggagcgggcggtgaag
gagcggatgtccagcgtggacatttcgaccgtgatgccgaacgacctgatcaacgccaag
ccggcggtggcggcggtgcgggagttcttcggctcctcgcagctgtcacaattcatggac
cagaccaatccgctgtctgaagtgacgcacaagcggcgcgtctcggcgctggggccgggc
gggttgacgcgggagcgggcagggttcgaggtgcgcgacgtgcacccgacgcattatggg
cgcatctgccctatcgagacgccggaagggccgaacatcggcctcatcaattcgctggcg
acgttcagccgggtgaacaaatatggcttcatcgagacgccctatcgcaaggtcatcgac
ggcaagctgaccgatgaggtggtgtatctgtcggcgatggaggaagccaagcacacgatc
gcgcaggcgaatgtggcgaccaacgcggacggcagctttgccgacgagctggtgagcgcg
cgggcggcgggcgagttcctgatcgcgcggcgcgaggacatcacgctgatggacgtgagc
ccgaagcagctggtgtcggtggcggcgtccctgatcccgttcctggaaaatgacgacgcc
aaccgggcgttgatgggatcgaacatgcagcgccaggcggtgccgctggtgaaggccgag
gcgccgtttgtgggcaccggcatggaagcgacggtggcgcgggattcgggcgcggcgatc
gcggcgcggcgcggcgggatcgtggaccaggtggatgccgggcggatcgtcatccgggca
accgaggatgtgcagccgggccagtcgatggtggacatctacacgctgatgaagttccag
cgctccaaccagaacacctgcatcaaccagcggccgctggtgacggtgggcgatgtggtg
gcgaagggcgacatcatctgcgacgggccgagcacgcaatatggcgagctggcgctgggg
cggaacgcgctggtcgcgttcatgccgtggaatggctataatttcgaagacagcatcctg
atcaacgaacgcatcgtgaaggaggatgtgttcacctcgatccatatcgaggagttcgag
gtgatggcccgcgacaccaagctggggccggaggacatcacgcgcgacatcccgaacgtg
ggtgaggaggcgctgcgcaacctggacgaggcgggcatcgtctatatcggtgccgaggtg
gagccgggcgacatcctggtgggcaagatcacgccgaagggcgagagcccgatgacgccg
gaggaaaagctgctgcgcgccattttcggtgagaaggcgagtgatgtgcgcgataccagc
ctgaagctgccgcccggcgtcgccggcacggtggtggaggtgcgggtgttcaaccggcac
ggcatcgacaaggatgagcgcgcgctggcgaacgagcgcgaggagatcgaccggctggaa
aaggacgccgcggacgagcgcgcgatcctggaccgcgcgacctatgccggcctgaaggcg
atgctgctggggcaggcggtggtgaccgggccgaagggcgtgaagaagggcgcgatcatc
gacgaggcgctgctggaggagtttccgcggcgggagtggtggaagctgggcgtggtcgat
gacggcgtgcaggccggtctggaggcctccaaggcgcagtgggatgccgcacaggcaagc
atccaggcgcggctggacgaccgcaaggacaagctgcagcgcggtgacgagctgccgccg
ggtgtgctgaagatggtgaaggtgttcgtggcggtgaagcgcaagctgcaaccgggcgac
aagatggccggccgccatggcaacaagggggtcatcagccgcatcctgccgtcggaagac
atgcctttcctggaggatggcacgcccgttgacctggtgctgaacccgctgggggtgcca
agccggatgaacgtggggcagattttcgagacccacctgggctgggccgcgcgcggcctg
ggacggcagatctcgatgatgctggaggatatccatgccaaggggcagcggctcgcggcg
gacgacatcgccggcgtgcgcggcaagctgaagagcatctatggcgcgcagaccgatgtg
gatgcgatggacgatgacgcggtcatcggcatggcgaccgacctggcggtgggggttccc
atgggcacgccggtgttcgatggcgcgcgcgaggcggatgtgtccgacatgctggaactg
gcggggctggacagctccgggcaggtcgagctgttcgacgggcgcagcggcgaggcgttc
gaccgcaaggtgaccgtcggctacatctacatgctgaagctgcaccatctggtggacgac
aagatccacgcgcgttcgatcgggccctacagcctggtgacgcagcagccgctgggcggc
aaggcgcagttcggcggccagcggttcggcgagatggaggtgtgggccttgcaggcctat
ggcgccgcctacacattgcaggagatgctgacggtgaagtccgacgatgtggtgggccgc
accaaggtgtatgaagcgatcgtcaagggggatgacacgttcgaatcgaacatcccggaa
agcttcaatgtgctggtgaaggaaatgaagagcctgagcctgaacatcgagctgaacaat
acggttgccgccgaataa
DBGET
integrated database retrieval system
