Sinocyclocheilus anshuiensis: 107679599
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Entry
107679599 CDS
T04917
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107679599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sanh03019
]
107679599
Messenger RNA biogenesis [BR:
sanh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107679599
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107679599
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
107679599
NCBI-ProteinID:
XP_016330675
LinkDB
All DBs
Position
Unknown
AA seq
2384 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASPDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIGLQSISNPVGGGIWSDGKDKSDGSQSHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAMGS
LSLGVTSTSHTPSIQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGINPLSSQLQGP
LSTSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDE
ANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPD
KELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKD
YPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQTP
KAPQPGLASTLVTTAITTTTAAKTTTITRPTAVGPKKDVPPSINTTNIDTLLVATDQTER
IVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHS
LYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKN
KPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNVLA
ELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKNLEEQLSAPKKETKPPE
ELLPIVTTDSVPFTAAPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHINININIP
LLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVAA
HHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNCE
LACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKCISDLE
QHLHAIPPALAMNPQTQAIRSLLEAVVLARNSRDGIAALGLLQKAVEGLLDATSGADPDL
LLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVSHITEADLFHTIETLMRTNAHSRA
NAPEGTPSLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLR
EWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQ
QLPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEASNTVTKINLLNKVGMLTMVLGIVVG
VLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAP
GFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILY
KGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKV
DMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNI
QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIAN
QLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN
PAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7155 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcagatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggattttagtggcgat
ggtaaaagcagtggcaaagatttccaccagacacaatttctgatccaggagtgtgtgtct
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcaaaagagtttgaaaccatcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaggaggtgatttttggccttgctctgctgaactccagcaacgcagac
cttcgagggtttgctgctcaatttgtgaagcagaagctccctgacctcctccgctcgtac
gtggacgcggacctcggagggaatcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctgctctcccatcttctgtttggtcagaagggctcgagcggagtcggacaa
gagcagattgacgcgttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgttgtaccctgacaaacgggacattctcatggacaggatcctg
ccagactctggagaattaaataagaccatgatggagagttcacttgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcctgatgagtgcaggaacataatcctgcagtat
ggtgtgcgagaggtgactgccagtcaggtggccagagtgttgggcatgatggcccgcact
cactccgggctgtccgatggcatcggcctacaatccatctcaaatccagtgggcggtggg
atctggagtgatgggaaggacaagagtgacggctctcagtctcacacctggaatgttgaa
gttctaattgatgtggtcaaagaagtgaaccccaatctgaatttcaaagaggtgacctat
gagctggaccacccaggcttcctgatccgtgacagtaaggggcttcagatagtggtctat
gggatccagaggggtctgggaatggaggtgttcccagtggatctcatctacagaccatgg
aagcatgcagaaggacagctgtcattcattcagcactcgctgatgagtcctgaagtgttc
tgctttgccgactatccctgtcatactgttgccattgacatcctgaaggccccacctgag
gatgacaacagagaaatagccacatggaagagcttggacctagtggaaagcctcttgcgc
ctctctgaagttgggcattatgaacaggtgaagcagctcttcagcttccccatcaagcac
tgcccggacatgctagtgctggcacttctgcagatcagcacctcctggcacaccctgcgt
catgagctcatctctaccctcatgcccatcttcctgggcaaccaccccaactctgccatc
atcttgcactatgcctggcatggacagggccagtccccctccatccgccagctgatcatg
cactctatggccgagtggtacatgagaggagagcaatacgaccaggccaagctatctcgc
atcctggatgtggctcaggacttgaagtctctatcgatgctgctgaatggtactccattt
gcttttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaatacgagagcatggggaaccattcatccaggcatgtgtcacattc
ctgaagagacgctgtccctctatcatgggtggtttggccccagagaaagaccagccaaaa
agtgctcaacttcctcctgaaacactggctaccatgcttgcatgtctgcagtcttgtgct
gggagtgtgtctcaagagctgtcagagacaatcttgactatggtggccaactgtagcaat
gtgatgaacaaggcccggcagccgccaccaggagtcttgccaaagggacgagctcccagc
accagcagcttagatgctatctcacctgtgcagatggatcctctctctgcgatgggctct
ttgagtctaggtgtcacgtccacctcccacaccccgagcatccaaggattccccagcctg
cagggctctgccttcagtaacccccagtccccagccaaagccttctcaaacctgcccaac
ccgaaccccagcacagctttcccaggaatcaaccccctctcttctcagctccaaggtcct
ctgagtacaagcttgactgggattggctcaggtttgggcatgcccgccgtcagcagtgac
cccttcggcactaggaagatgagcacaccagggctgaacccgcccaccttccagcagact
gacctctctcaggtgtggcccgaggcaaaccagcactttagtaaggagatagacgatgag
gcaaatagctacttccagcgtatctacaaccatccgccgcaccccacaatgtccgtggat
gaggtgctggaaatgctgcagagatttaaggactcaaacatcaagcgagaacgggaagtt
tttaactgcatgctgaggaatctgttcgaggagtaccgattcttccctcagtatccagat
aaagaactgcacatcaccgcttgcctcttcggggggatcattgagaagggcctggtcacg
tacatggcgctgggcttggctttacgatatgtcctggaagccttacgcaaacctttcgga
tcaaagatgtattactttgggatcgctgcactagatagatttaaaaatagactgaaggac
tatccccagtactgtcagcacttggcatcaatagcccatttcctgcagtttccgcaccat
ttacaagagtatatagagtatggccagcagtccagagaccctcctgtgaagatgcaaggc
tccattactacccctggcagcctggctttagcccaggctcaagctcagtctcagaccccc
aaagccccacaacctggcctggccagcaccttagtgaccacagccatcacaaccaccacc
gctgccaaaaccacaaccatcacgagacctacagctgttggaccgaagaaagacgtgcca
ccttcaatcaacaccacaaacattgacaccttgttagtggctacagaccagactgaaagg
atcgttgagcccccagagaatgttcaggagaagattgcgttcatcttcaacaacttgtcc
caatcaaacatgacccaaaaggtggaggagctgaaagagactgtaaaagaagaattcatg
ccctgggtctctcagtacctggttatgaagcgtgtcagcattgagcctaacttccacagc
ctgtattctaatttcctggacacactgaaaaacccagagtttgttaagatggttctcaat
gagacgtacagaaacatcaaggtccttcttacctctgataaggcagctgctaacttctca
gatcgatcactgctgaagaatttgggtcactggcttggaatgatcaccctagctaaaaac
aaacccatcctgtacacagacctggagctgaaatctctcttgctagaggcttatgtgaaa
ggccaacaggagttactgtatgtcgtcccctttgtggccaaagtcttggaatcaagtctg
cggagtgtgatcttcagaccgcagaacccttggaccatgggcatcatgaatgtactggct
gagctccaccaggaacatgacttaaagcttaacctcaagtttgagattgaggtgctctgc
aagaatctgtctttggatatcagtgagctgaaaccaggaaacctactgagagacaaagag
aagctgaagaacttggaggagcagctctctgcaccaaagaaagagaccaagcctcctgaa
gagctgcttcctatagttacaacagattctgttccatttacagctgctccctcaactcca
gccaccaccacgacctgtacggccactgggccgcccacaccacaattcagctaccatgac
atcaatgtgtacgccctggctggcctggctccgcacatcaacatcaatattaacatccca
ctactgcaggcccaccctcagctgaaacagtgtgtaagaccagcaattgagcgtgctgta
caggaactggtgcacccagtggtggaccgatccatcaagatcgccatgaccacctgtgag
caaatagtcaggaaggacttcgcacttgactctgaggagtctcacatgcgtgtggccgcc
caccacatgatgcgtaacctgactgccggcatggccatgatcacctgcagagagccgctg
ctcatgagcatcgccaccaacctgaagaacagctttgctgcagctcttagggctcccaca
ccccagcagagagagatgatggaagaggcagctgctcgcatcgcacaggacaactgtgag
cttgcttgttgctttatccagaagacagcagtggagaaagctggacctgagatggacaag
agactagcaactgaattcgagctgaggaagcacgctcgccaagaaggccgtcgctactgt
gaccccatggtgctcacctatcaggctgagcgcatgccagagcagatcagactgaaggtt
ggtggagtagatcctaaacagctggctgtttatgaggagttcgcccgaaatgttccaggc
ttcctacccagtaacgacctgtctcagcccactggtttccttgcccaaccaatgaagcaa
caggcatggcccactgatgatgtggctcacatctacgataagtgcatttcggacctggag
cagcacctgcacgcaattccacctgcgctggccatgaacccgcagacccaggccatacgc
agccttctggaggccgttgtcttggctaggaactcccgtgatggcatcgctgccctgggc
cttttgcaaaaggctgtggagggtctgcttgatgccaccagtggtgctgatcctgatctg
ctgctaagctacagggagtgccatctgctggtgctgaaagccctacaggatggtcgtgcc
tacggcccacagtggtgcaacaaacaaatcaccagatgcctgattgagtgcagagatgaa
tacaagtacaacgttgaggccgtggagctcctcatcagaaaccacctggtcaacatgcaa
cagtatgacttacacctggctcagtccatggagaatgggctcaactacatggccgtggca
ttcgccatgcagctggtgaagatcctgctggttgacgaacgcagcgtgagtcacatcact
gaagcagatctcttccacaccattgagacgctgatgaggaccaacgctcactccagagcc
aatgctcctgaaggaacccctagtttgccccagctgatggatgttgtccgctccaactac
gaggccatgatcgatcgtcaccatggtgggccgaacttcatgatgcactctgggatttct
caagcctctgaatacgatgacccaccaggccttagagagaaggcagagtacctgctgaga
gaatgggtcaacctgtaccactcggcagctgcaggaagagacagcaccaaggcattctct
gcgtttgttggccagatgcaccagcagggcatcctgaagaccgatgacctgatcactcgc
ttcttccggctgtgcacagaaatgtgtgtggagatcagttaccgtgctcaagctgaacag
cagcttccaaccaccagccccgccattatcagggccaagtgctaccataacctggatgct
tttgttcggctcattgcgcttcttgtcaaacactctggagaggcctccaacacagtcacc
aaaatcaacctgctcaacaaggttggaatgcttacaatggttctaggcattgtggtgggt
gtattgatccaggatcacgatgtgaggcagacagagttccagcagcttccgtaccacaga
atcttcatcatgctcctgctggagcttaacgcaccagagcatgtgctggagaccatcaac
ttccagacgctcactgccttctgcaataccttccacatcctgaggccgactaaagcacct
ggttttgtctatgcttggctggagctcatctcacaccgtatcttcattgccaggatgctt
gcacataccccgcaacagaagggttggccaatgtatgcccagctgctgatagacttgttc
aaatatcttgcacccttcctaaggaatgttgaactcaacaaacctatgcaaattctctac
aagggaacacttcgtgtgctgcttgtcctgctacatgacttccccgaattcctgtgcgac
taccattatggcttctgcgacgtcatcccgcctaactgcatccagctgaggaacctgatc
ctgagtgccttcccccgcaacatgaggcttccagaccccttcacccctaatctgaaggtg
gatatgctgagtgagatcaacattgctccccgcatcctcactaacttcaccggtgtgatg
ccgtcccagtttaagaaggatcttgactcctacctcaagacccgttctcctgtcaccttt
ctttctgagctgcgcagcaacctgcaggtgtccaatgagccaggcaaccgctacaacatt
cagctaatcaatgctctggtgctgtacgttggaacccaggccattgcccacatccacaac
aagggcagcactccctccatgagcaccatcactcactcggctcacatggacatcttccag
aacctcgcagttgatctagacactgagggccgctatctgttcctgaatgcgatagccaat
cagctgcgttatccaaacagccacacacactactttagctgtaccatgctgtatctgttt
gccgaggccaacgctgaagccattcaagagcagatcaccagggtcctgctggagaggctg
attgtgaacaggccacacccgtggggtctgctcatcacctttattgagctgatcaagaac
cctgcctttaaattctggagccatgattttgtgcactgtgccccagagatcgagaagttg
ttccagtcggtggctcagtgctgcatggggcagaagcaggcccagcaggtgatggaggga
acaggtgctagttag
DBGET
integrated database retrieval system
