Sanguibacter sp. HDW7: G7063_11615
Help
Entry
G7063_11615 CDS
T06485
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sanw
Sanguibacter sp. HDW7
Pathway
sanw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sanw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G7063_11615 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sanw03400
]
G7063_11615 (mfd)
Enzymes [BR:
sanw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G7063_11615 (mfd)
DNA repair and recombination proteins [BR:
sanw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G7063_11615 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QIK84191
UniProt:
A0A6G7Z5C4
LinkDB
All DBs
Position
complement(2554879..2558520)
Genome browser
AA seq
1213 aa
AA seq
DB search
MSLTGVLALLRQDAAVADAVDRVSARGALDVVAPAGVRPGLLALLAGADPDAAAAAGAEV
VDVVYRSGRPLVVVTATGREAEETAAALSSYLPADDVAVLPAWETLPHERLSPRADTVAN
RLGVMRRLAHPAAERGVDGPVRVLVVPVRSLLQPVVAGLGDLEPVQLRAGDRVDLTDVAQ
RLADAAYTRVDMVERRGEFAVRGGILDVFPPTEDHPVRVELWGEDVEEVRWFAVADQRSL
EIAEHGLWAPPCRELLLTPQVRERAEALIQRLPGATEMLDRMAQGIAVEGMESLTPALVD
DMVPLLDLVPDDALLVVADPERVRRRAHDLVATTEEFLAAAWTSAVAGAATPIDLSAASF
LTIADVRDLAAVRGLGWWTLTPFAHGPDGEDATVVDEDAPVLRVGARDVETYRGDVQRAL
DDVRGLQLAGWHLVLSTEGHGPARRMTEQLSAEGTAARLVSDVPLVPEGGVVHVLAAPVG
TGYVHTDLRLAVFSEADLTGRAGSSTRDMRRMPSKRRNVVDPLALRPGDFVVHEQHGVGR
FVELVQRTTGAGAKKAVREYLVVEYASSKRGQPGDRLFVPTDQLDQVTRYTGGESPSLNR
MGGADWQKTKAKARKHVREIAGELVRLYSARMATQGHAFGPDTPWQRELEDAFAYVETPD
QLATIEEVKADMEKPVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVNQ
HLETFAERYAAFPVTVKALSRFQTDLEAEAVLKGLKDGSVDVVIGTHRLLTGLMRFKDLG
LVIIDEEQRFGVEHKETLKQLRTDVDVLAMSATPIPRTLEMAVTGIREMSTLQTPPEERH
PVLTYVGAYDDKQITAAVRRELLREGQVFYVHNKVDTISKAAARLQELVPEARIATAHGK
MNENQLEQVIQDFWDKKFDVLVSTTIIETGLDISNANTLILERADVLGLSQLHQLRGRVG
RGRDRAYAYFLYPPEKPLTETAHDRLATMAAHTDLGAGMQIAMKDLEIRGAGNLLGGEQS
GHIAGVGFDLYVRMVGEAVAAYRGDAEEEAPEVSIELPVDAHVPHDYIAHERLRLEAYQK
IAAAQTDEVLAEVRAELVDRYGPVPEAVSALFDVASFRNFVRTAGLRDVTAQGKHIRFAP
LELPESATLRLQRLYPGSMLKPAIRAVLVPFPTTARVGGQPLHGSAVLAWARQLVEAVVL
GNVASAAARGTSA
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcaccggtgtgctcgccctcctgcgccaggatgcggcggtggccgacgcggtg
gatcgcgtgagcgcgcggggtgcgctcgacgtcgtcgcaccggcgggcgtccggccgggg
ctgctcgcgctgctcgcgggcgccgacccggacgcggctgctgcggctggggccgaggtc
gtggacgtcgtctaccggtcgggccgtccgctcgtcgtcgtcacggcgacggggcgtgag
gccgaggagacggcggcggcgctgtcgtcgtacctgcctgcggacgacgtcgcggtgctg
ccggcgtgggagacgctgccccacgagcggctctcgccgcgcgcggacacggtcgccaac
cgtctcggtgtcatgcgccgcctcgcgcacccggcggcggagcggggcgtcgacgggccg
gtgcgcgtgctcgtcgtgcccgtgcgctcgctcctgcagcctgtcgtcgcaggtctgggg
gacctcgagccggtgcagctgcgcgcgggggaccgcgtcgacctcacggacgtcgcgcag
cgtctcgcggacgcggcgtacacgcgcgtcgacatggtcgagcggcgcggggagttcgcg
gtgcgcggcgggatcctcgatgtcttcccgccgacggaggaccacccggtgcgcgtcgag
ctgtggggcgaggacgtcgaggaggtccgctggttcgcggtcgccgaccagcgcagcctc
gagatcgcggagcacgggctgtgggcgccgccgtgccgggagctgctcctcaccccgcag
gtgcgcgagcgcgcggaggcgctcatccagcggcttccgggtgcgacggagatgctcgac
cgcatggcgcagggcatcgcggtcgagggcatggagtcgctcacgccggcgctcgtcgac
gacatggtgccgctgctcgacctcgtgccggacgacgcgctcctcgtcgtcgcggacccg
gagcgggtacggcgcagggcgcacgacctcgtcgcgacgaccgaggagttcctcgcggcg
gcgtggacgtcggccgtggcgggtgccgcgacgccgatcgacctgtctgcggcgtcgttc
ctcacgatcgctgacgttcgtgacctcgcggccgtgcggggcctgggctggtggacgctc
acgccgttcgcgcacgggccggacggcgaggacgccactgtcgtcgacgaggacgcgccc
gtcctgcgcgtcggcgcgcgcgacgtcgagacgtaccggggcgacgtgcagcgggcgctc
gacgacgtgcgggggctgcagctcgcgggctggcacctcgtgctctcgacggagggccac
ggtcctgcccggcgcatgacggagcagctctcggccgaggggacggcggcgcggctcgtg
agcgacgtgccgctcgtgcccgagggcggagtcgtccacgtgctcgcggcgcccgtcggc
acgggctacgtccacacggacctgcgtctcgcggtgttctcggaggccgacctcacgggg
cgggcgggcagctcgacgcgcgacatgcgtcgcatgccgtcgaagcgccgcaacgtcgtc
gacccgctcgctctgcggcccggggacttcgtcgtccacgagcagcacggcgtgggccgc
ttcgtcgagctcgtgcagcgcacgacgggtgcgggcgcgaagaaggcggtgcgcgagtac
ctcgtcgtcgagtacgcgtcctcgaagcgcgggcagccgggcgacaggctcttcgtgccg
acggaccagctcgaccaggtgacgcggtacacgggcggggagtcgccgagcctcaaccgc
atgggcggcgcggactggcagaagacgaaggcgaaggcccgcaagcacgtcagggagatc
gcgggcgagctggtccgcctgtactcggcgcgcatggcgacgcagggtcacgcgttcggc
ccggacacgccgtggcagcgcgagctcgaggacgcgttcgcgtacgtcgagacgcccgac
cagctcgcgacgatcgaggaggtcaaggcggacatggagaagccggtcccgatggaccgg
ctcgtgtgcggcgacgtcggctacggcaagacggagatcgcggtccgcgcggcgttcaag
gcggtgcaggacggcaagcaagtcgcggtgctcgtcccgacgacgctgctcgtcaaccag
cacctcgagacgttcgcggagcgctacgcggcgttcccggtgacggtcaaggcgctctcg
cgcttccagacggatctcgaggccgaggccgtgctcaaggggctcaaggacggttcggtc
gacgtcgtcatcggcacgcaccggctgctcacgggtctcatgcgcttcaaggacctgggg
ctcgtcatcatcgacgaggagcagcgcttcggcgtcgagcacaaggagacgctcaagcag
ctgcgcacggacgtcgacgtgctcgcgatgtcggcgacgccgatcccgcgcaccctcgag
atggcggtgacgggcatccgtgagatgtcgacgctgcagacgcccccggaggagcgccac
ccggtgctcacgtacgtcggggcgtacgacgacaagcagatcacggccgccgtgcgacgc
gagctgctgcgcgagggccaggtcttctacgtccacaacaaggtcgacacgatctcgaag
gcggctgcacgtctccaggagctcgtgccggaggcccggatcgcgacggcccacggcaag
atgaacgagaaccagctcgagcaggtgatccaggacttctgggacaagaagttcgacgtc
ctcgtctcgacgacgatcatcgagacgggcctcgacatctcgaacgccaacacgctcatc
ctcgagcgggcggacgtgctcgggctctcgcagctccaccagctgcgcggccgtgtcggg
cgcggtcgtgaccgtgcgtacgcgtacttcctctacccgccggagaagccgctcacggag
acggcgcacgaccggctcgcgacgatggcggcgcacacggacctcggtgcgggcatgcag
atcgcgatgaaggacctcgagatccgtggtgcgggcaacctgctgggcggcgagcagtcg
gggcacatcgcgggcgtcggcttcgacctctacgtgcgcatggtcggcgaggctgttgct
gcctaccggggcgacgcggaggaggaggcgcccgaggtctcgatcgagctcccggtcgac
gcgcacgtgccgcacgactacatcgcgcacgagcgcctgcggctcgaggcgtaccagaag
atcgcggccgcgcagacggacgaggtcctcgccgaggtgcgcgcggagctcgtcgaccgc
tacgggccggtgcccgaggctgtctcggcgctcttcgacgtcgcgtcgttccgcaacttc
gtgcggacagcaggcctgagggacgtcacggcgcagggcaagcacatccgcttcgcgccg
ctcgagctgcccgagtcggcgacgctccgcctccagcgcctctacccgggcagcatgctc
aagccggcgatccgcgctgtgctcgtgccgttcccgacgacggcgcgcgtgggcggacag
ccgttgcacggctcggccgtgctcgcctgggcgcggcagctcgtcgaggccgtcgtgctg
ggcaacgtggcctcggcggcggcgcgggggacgtcggcataa
DBGET
integrated database retrieval system
