Sulfurimonas aquatica: GJV85_01690
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Entry
GJV85_01690 CDS
T08902
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
saqt
Sulfurimonas aquatica
Pathway
saqt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
saqt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GJV85_01690 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saqt03021
]
GJV85_01690 (rpoB)
03400 DNA repair and recombination proteins [BR:
saqt03400
]
GJV85_01690 (rpoB)
Enzymes [BR:
saqt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GJV85_01690 (rpoB)
Transcription machinery [BR:
saqt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GJV85_01690 (rpoB)
DNA repair and recombination proteins [BR:
saqt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GJV85_01690 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
INO80F
Motif
Other DBs
NCBI-ProteinID:
QSZ40876
UniProt:
A0A975AYE0
LinkDB
All DBs
Position
339514..343662
Genome browser
AA seq
1382 aa
AA seq
DB search
MLNTLYSGNRLRVDFSKTPQEIEVPNLLQLQQSSYDKFLMIDAKDRSLSGIENVFQSAFP
IHDSQNRLTVEYIGSEVANPKYTVRECMERGLTYAVSLRMKTRLVLWDRDENTKEKLGVK
DIKEQSIFVRDIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESTTAGNKLIYTGQI
IPDRGSWLYFEYDPKDILYMRINKRRKVPITIMFRALGYSKQDILKLFYPIQTISIHDNN
FTIAFNPKDYAVRISYDLVDLDGKIIVAAGKRLSVKKSQKLVEDGLATVQYPLEILLDRY
LAEAIIDPETGEVLFDAMTRIDETKLKKLAEIGVTEFKIANDLAEGVDRSVINAFNADAD
SLKLLKQTEEIEDENDLAAIRIYKVMRPGEPVTKEAARIFVNQLFFDPERYDLTRVGRMK
MNHKLGLNIPEYVTVLTHQDVIESVKYVIKVKNGQGHIDDRDHLGNRRIRSIGELLGNEL
HNGLVKMQKAIRDKLSTMSGPMQELMPHDLINSKMITSTIMEFFSGGQLSQFMDQTNPLS
EVTHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLATYSKVN
EHGFIEAPYKVMKDGKITSEVIYLTATQEEGVKIAAASNKVDENNQFIDDLIAVRQDGEI
LLRDPSECEYADLSSHMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRVNSPMVGT
GVEKLVARDSWECVKANRGGKIEKVDGKHIYVMGEEDGEIYIDYYPLQKNLRTNQNTSFT
QKPIVNVGDIVSKGQIIADGPNMDQGELALGVNAMVAFMPWNGYNFEDAIVISERMIRKD
QFTSVHIYEKEVEARELKHGVEEITRDIPNVRDDELAHLDESGIVKIGTNVRGGMILVGK
VSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSMEGVIVDIKVFTKKGYDKDPCAL
ALEKEERDYLEREHYDRLLMIDKEEMLRVTKLLTREPLSSDIKIGETEYKAGDTINGEDL
AEVNRFAMNAIVKSFSENIQNEYTKTKNHFQKQKRVFRDEHEEKLTILEKDDILPNGVVK
YVKIYVATKRQLKVGDKMAGRHGNKGIVSIIVPEVDMPYMEDGRSVDVCLNPLGVPSRMN
IGQILEMHLGMAGRELGNQIQEQFETKQKDYIDNMRSKMIEIADVAGMMNAVKVIGAMSD
DEFLKYARDWAKGGVRFATPIFEGVNAVEFEKLYKLANMDTDGKVVLYDGKTGAKIKERV
NVGYMYVLKLHHLVDEKIHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGASA
VLKEMLTIKSDDVDGRVRAYKALTKGELVPASGIPETLFVLTKELQALALDVEIMDEVED
DE
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacactttatattccggaaaccgtcttcgtgtagatttctctaaaacacctcaa
gaaattgaagtaccaaacttattacaactacaacaaagttcatatgataaatttttaatg
atagatgctaaggacagatcacttagtggaattgaaaatgtatttcaatctgcctttcct
attcatgattcacaaaatagattaacagtagagtatataggtagtgaagtagctaaccct
aaatatactgtacgtgaatgtatggaacgtggacttacttatgcagttagtcttagaatg
aaaactcgccttgtcctatgggatagagatgaaaacactaaagaaaaacttggtgttaaa
gatataaaagagcaaagtatatttgttcgtgatatccctcttatgactgatagaacttct
ttcattattaacggcgttgagcgtgttgttgtaaatcaacttcaccgttctccaggtgtt
atttttaaagaggaagagtctacaactgctggtaacaagcttatctatactggtcaaatt
attccagatcgcggttcatggttatattttgagtatgatccaaaagatattctttatatg
agaattaacaaacgccgtaaagtgcctattactattatgttccgtgctttaggctactca
aaacaagatatattaaaacttttttatccaatacaaactattagcatacatgataataat
ttcactattgcgtttaatcccaaagattatgctgtaagaatctcttacgatttagttgac
ttagacggaaaaattattgttgcagctggaaaaagattatcagtgaaaaaatctcaaaag
ttagtagaagatggtcttgcaactgttcaataccctttagagattcttttagatagatat
cttgctgaagctattattgacccggagacaggtgaagttctttttgatgcgatgactcgt
attgatgaaactaaacttaaaaagttagctgaaataggtgtaactgagtttaaaattgca
aatgatttagctgaaggcgtagatagatcagttattaatgcatttaacgctgatgcagat
tcacttaaacttcttaagcaaacagaagagatagaagatgagaatgatttagctgctatt
cgtatttataaagtaatgcgtccaggtgagccagttactaaagaagcagcacgtatattt
gtaaatcaacttttctttgatccagagagatatgatttaactcgcgttggtcgtatgaaa
atgaaccataaattaggacttaatattcctgaatatgtaacagtgttaacgcatcaagat
gttattgagtcagttaagtatgttattaaagttaaaaatggtcaaggtcatattgatgat
agagatcacttaggtaaccgtcgtatccgttctattggtgagcttttaggtaatgagtta
cataatggtcttgttaaaatgcaaaaagctattcgtgacaaactctcaactatgagtggt
ccaatgcaagaacttatgccacatgatttaatcaattctaaaatgattacttctactatt
atggaattcttttcaggtggtcaactttctcagtttatggatcaaacaaatccactctct
gaagtaacgcataaacgtcgtttgtctgcgcttggtgaaggtggtcttgttaaagagaga
gccggctttgaagtacgtgacgttcaccctactcactatggtagaatctgtccaattgag
actccagagggtcaaaatattggtcttatcaatactcttgcaacttactcaaaagtaaat
gagcatggatttattgaagcaccatacaaagtaatgaaagatggaaagatcacttctgaa
gttatttatttaactgctactcaagaagagggtgtaaaaattgcagctgcttctaataaa
gtagatgaaaataatcagtttattgatgaccttattgctgttagacaagatggagagata
cttttacgtgatccttcagagtgtgaatatgcagacctttcatcacatatggttgttggt
gttgcagcttctcttattcctttccttgagcatgatgatgccaatcgtgcgcttatggga
tcaaatatgcagcgtcaagcggttccacttttacgtgtaaattctccaatggttggaaca
ggagttgaaaaacttgttgctcgtgactcatgggaatgtgtaaaagcaaatcgtggcggg
aagatagaaaaagttgatggtaaacacatatatgtaatgggtgaagaagatggagaaatc
tatattgattattatccattacagaaaaaccttagaacgaatcaaaatacttcgtttact
caaaaaccaatagttaatgttggtgacattgttagtaaaggacaaattattgctgatggt
ccaaacatggatcaaggtgagttagcacttggtgttaacgctatggttgcgtttatgcca
tggaatggttataactttgaggatgctatcgttatctctgagcgtatgattcgtaaagat
caatttacttctgttcacatttatgaaaaagaagttgaagctcgtgaacttaagcatggc
gttgaagagattactcgtgatattccaaatgttagagatgacgagctagctcatttagat
gagtctggtattgttaaaattggtactaatgttagaggtggtatgattttagttggtaaa
gtttctcctaagggtgaagttaaaccaactccagaagagcgtctccttcgtgctatattt
ggtgaaaaagctggtcatgtagtaaataaatcactctattgtcccccatctatggaagga
gtaatcgttgatattaaagtatttactaaaaaaggttatgacaaagacccttgtgctctt
gcgttagaaaaagaagagagagattacttagagcgtgaacactatgatagacttcttatg
atagataaagaagagatgttaagagttacaaaacttcttactcgtgaaccactatcttct
gatattaaaataggtgaaacagagtataaggctggagatactattaatggtgaagatctt
gcagaagtaaatcgttttgctatgaatgccattgttaaatcattctcagaaaatattcaa
aatgagtatactaagactaaaaaccattttcaaaaacaaaagcgtgtatttagagatgag
catgaagaaaaacttactatattagaaaaagatgacatccttccaaatggtgttgttaaa
tatgtaaagatttatgtagctacaaaacgccaacttaaagttggtgataaaatggctgga
cgtcacggaaataaaggtattgtatctattatagttcctgaagttgatatgccatatatg
gaagatggacgttcagttgatgtatgtcttaatccacttggtgtaccttcacgtatgaat
attggacagatcttagagatgcaccttggtatggctgggcgtgagcttggaaaccagata
caagagcagtttgagactaaacaaaaagattacattgataatatgcgttctaaaatgatc
gaaatagctgatgttgcaggaatgatgaatgcagtaaaagtaattggtgcgatgagtgat
gatgaattcttaaagtatgctagagactgggcaaaaggtggagttcgttttgcaacacca
atttttgaaggtgtaaatgccgtcgaatttgaaaaactctacaaattagcgaatatggat
actgatggtaaagtcgtactttatgatggtaaaactggggctaaaataaaagagcgtgtt
aatgttggatatatgtatgttcttaaactacatcacttagttgatgagaaaattcatgct
cgttcaactggaccttactctctagtaacgcaacagccggttggtggtaaagcactattt
ggtggccaaagatttggagagatggaagtttgggctcttgaagcttatggtgcatctgct
gtacttaaagagatgttgactattaagtctgatgatgtagatggccgtgtacgtgcatat
aaagcacttactaaaggcgagttagtaccagcttcaggtattcctgaaacactatttgtt
ttaacaaaagaacttcaagcacttgctcttgatgttgagattatggacgaggtggaagac
gatgagtaa
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