Sorex araneus (European shrew): 101539812
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Entry
101539812 CDS
T07854
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101539812 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sara03019
]
101539812 (CNOT1)
Messenger RNA biogenesis [BR:
sara03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101539812 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101539812 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
101539812
NCBI-ProteinID:
XP_004600688
LinkDB
All DBs
Position
Unknown
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEDFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHPVTTDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQIPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPALAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVDLLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagataggcatttattacgctgcctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagacccagtttctgattcaggagtgtgcgtct
ctgattacaaagccaaattttatctcgacgctgtcctatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttgtttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtgatatttggccttgccctcttgaattcttccagctcagat
ctcagaggttttgctgcccagtttataaaacagaagctaccagatcttctgcgttcttac
atcgacgcagacgtcagcggaaatcaagaaggtggcttccaggatatagcaatagaggtc
ctacacctcctcctctcccatcttctctttgggcagaagggagcctttggagttggacag
gaacagatagacgctttccttaagacactgcgcagagattttcctcaggaacgctgtccc
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagctaagaccatgatggagagttccttggctgatttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggcgttcgggaggtcacagctgcccaggttgcaagagttttgggaatgatggctcggact
cattcgggacttacagatggtattccactacagagtatctctgctcctggcagtgggatc
tggagtgatggaaaagataaaagtgatggcgcacaggcacacacatggaatgtggaagtc
ttgattgatgttctcaaagaactgaacccgagtttgaatttcaaggaagtaacttacgaa
ctggaccatcctggctttcaaattcgtgatagtaaaggacttcataatgttgtttatggc
attcaaaggggtctgggtatggaagatttcccagttgacctcatatatagaccttggaaa
catgcagaaggccagctctccttcattcagcattcccttataaatccagaaatcttctgt
tttgctgactatccctgtcatcctgttaccactgatattctgaaagcaccaccagaggac
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctcttgaggctt
gcagaggtggggcaatatgaacaagtcaaacaactcttcagcttccctattaagcactgt
ccggacatgctagtgttggccttattacaaataaacacctcttggcacaccttgcgccat
gaactcatctccactctgatgccaattttccttggaaatcaccctaactcagctattatt
ttgcactatgcatggcatggacagggacagtctccctcaatccgccaacttatcatgcat
gcaatggcagaatggtacatgcgtggggaacagtatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggctttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttctcgtcgtgaatacctcaaacttgacaagtgg
ctcacagataaaattcgagagcatggagagccttttatccaggcatgcatgactttttta
aagagacgttgcccatctattttgggtggacttgccccagaaaaagatcagccgaaaagt
gctcaacttcctccagaaacgttggcaacaatgttggcatgtttacaagcttgtgcaggg
agtgtttctcaggagttatcagaaaccatcctcactatggtagccaattgcagtaatgtt
atgaataaggcaagacaaccgccacctggagttatgccaaaaggtcgccctcccagtgct
agtagcttagatgctatttctcctgttcagattgacccgcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggttttcctccaaatttg
ggttctgcgttcagtacccctcagtcaccagcaaaagcatttccacccctttcaacccca
aatcagacaactgcattcagtggtattggaggactttcatcacagcttccagtaggtggt
cttggcacaggcagcctgactggtataggaactggggctcttggactccctgcagtgaat
aatgatccttttgtacagaggaaactgggcacctctggactgaaccagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtgtggccagaggcaaaccagcacttt
agtaaagagatagatgatgaagcaaacagctatttccagagaatatataatcacccacca
catccaaccatgtctgttgatgaggtattagaaatgttgcagaggtttaaagattctact
atcaaaagggaacgagaagtatttaactgtatgctaaggaacttatttgaagaatatcga
tttttcccccagtaccctgataaagaattacatataacagcctgcctttttgggggaata
attgaaaaaggactggttacttacatggcactgggcctggccctgcgatacgttcttgaa
gccttacgcaagccttttggatccaaaatgtattattttggtattgctgcactagataga
tttaaaaataggttgaaggattacccccagtattgtcagcacttggcttctatcagtcac
tttatgcaatttccacatcatttacaagagtatatcgagtatggacagcagtctagagac
cctcctgtgaaaatgcagggctctatcacaacccctggaagtattgcactggctcaggct
caggctcaggcccagattccagcaaaagctccccttgctggtcaggttagcactatggta
accacttcaacaaccaccactgttgctaaaacggttacagtcaccaggccaactggagtc
agctttaagaaagatgtgccaccctctattaatactacaaatatagatacattgcttgtg
gccacagatcaaactgagaggattgtagagcccccagaaaatatccaagaaaaaattgct
tttatcttcaacaatctctcacagtcaaatatgacacaaaaggttgaagaactaaaggaa
actgtgaaggaagaatttatgccttgggtttcacaatacctagttatgaagagagtcagt
attgagccaaattttcacagcctgtattcaaatttcctcgataccctgaagaatcctgaa
tttaacaagatggttctcaatgaaacctacagaaacattaaagttctgcttacctctgat
aaagctgcagccaatttctcagatcgctccttgttgaagaacttgggacattggcttgga
atgatcacactagctaaaaataaacccatcttacacactgacttggatgtaaaatctttg
ctgctagaggcttatgttaaaggacagcaggaattgctctatgtagtgccctttgtcgcc
aaagtcttagagtctagcattcgtagtgtggtctttaggccacccaacccttggacaatg
gcaattatgaatgtattagctgagctacatcaggaacatgacttaaagttaaacttgaag
tttgaaattgaggtcctctgcaagaaccttgcattagacatcaatgagctaaaacctgga
aacctcctaaaggataaagatcgcctgaagaacttagatgaacagctctctgctccaaag
aaagatgtcaagcagccagaagagctccctcccatcactaccacaacaacttctacaaca
ccagcgaccagtaccacctgtactgccactgttccaccacagccacagtacagctaccat
gacatcaatgtctattcccttgcgggcttggcaccacacattactctaaacccaacaatt
ccgctgtttcaggcacatccacagctaaagcaatgtgtacgtcaagcaattgaacgggca
gtccaggagctggtccatccggtggtggatcgttctattaagattgccatgactacttgt
gagcaaatagtcagaaaagatttcgccctggattctgaggagtctcgaatgagaatagca
gctcatcatatgatgcgtaatttgacagctggaatggccatgattacatgcagggaacct
ttacttatgagcatatctactaacttgaaaaatagctttgcctcagcccttcgaactgca
tccccacaacagagggaaatgatggatcaagcagctgcccagttagctcaggacaattgt
gaattagcttgctgttttattcagaagactgcagtagaaaaagcaggccctgagatggat
aagagattagcaactgaatttgagctgagaaaacatgctaggcaagaagggcgaaggtac
tgtgatccagttgtgctaacataccaagctgagcgaatgccagagcaaatcagactaaaa
gttggtggtgtggacccaaagcagctggctgtttatgaagaatttgcacgcaatgtgcct
ggtttcttgcctacaaatgatttaagtcagcccaccggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcagatttatgacaagtgcattacagaactggag
cagcacctacatgctattccgccagctctggccatgaatcctcaagcacaggctctcaga
agtcttttggaggttgtggtactatctcgaaactctagggatgccatagctgctcttgga
ttgctccagaaggctgtagagggcttattagatgccacaagtggtgctgatgctgaccta
ctgttgcgctatagagagtgccaccttctggtgctcaaagctcttcaagatggccgggca
tatggatctccatggtgtaataaacagatcacaaggtgcctaattgaatgtcgggatgag
tataaatacaatgtggaagctgtggatttgctaattcgcaatcatttggttaatatgcag
caatatgatcttcatctagctcagtcaatggagaatggtttaaactacatggccgtggca
tttgctatgcaattagtaaaaatcttgttggtggatgaaagaagtgttgcccatgtaact
gaggcagatctgttccacaccattgaaaccctcatgaggattaatgctcattccagaggc
aatgctccagaaggattaccccagctgatggaagtagtacgatccaactatgaagcaatg
attgatcgtgctcatggaggccctaattttatgatgcattctgggatctctcaagcctca
gagtacgatgatcctccgggactgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacagatgcatcagcaagggatcctgaagactgatgacctcataacaaggttctttcgt
ctgtgtactgaaatgtgtgttgagatcagttatcgtgctcaggcagagcagcagcacaat
cctgcagctaatcccaccatgatccgagccaaatgctatcacaacctggatgcctttgtc
agattaattgcactgctagtgaagcactcaggggaagccaccaacactgtcaccaagatt
aatttactgaacaaggtccttggtatagtagtgggagttctgctacaggatcatgatgtt
cgacagagtgaatttcagcaacttccatatcatcggatatttataatgctgctcttggaa
ctcaatgcacctgagcatgtattggaaactattaatttccagacgcttacagctttctgc
aatacattccacatcttgaggcctaccaaagctcctggctttgtgtatgcctggcttgaa
ctgatctcccatcggatatttattgcaagaatgctggcacatacgccacagcagaaggga
tggcctatgtatgcacagctactgattgatttattcaaatatttagcaccttttcttaga
aatgtggaactcaccaaacctatgcaaatcctctataagggcactttaagagtgctgctg
gttcttttgcatgatttccctgagttcctttgtgattaccattatggattttgtgatgtg
atcccacctaactgtatccagctaagaaatctcatcttgagtgccttcccaagaaacatg
aggctcccagatccattcactcctaatttgaaggtggatatgttgagtgaaattaacatt
gcaccccggattcttaccaattttactggagtgatgccacctcaattcaaaaaggatttg
gattcctatcttaaaactcgatcaccggtgacttttctgtctgacctgcgcagcaaccta
caggtatccaatgagcctggcaatcgctacaacctccagctcatcaatgcactggtgctc
tacgtagggactcaggccattgcacacattcataacaagggcagtacaccttcaatgagc
accatcacccactctgctcacatggacatcttccagaacctggcggtagatttggatact
gaaggtcggtatctcttcttgaatgcaattgcaaatcagctgcggtacccaaatagccac
actcactattttagctgcaccatgctgtacctttttgcagaggccaatactgaagctatc
caagaacagatcacaagggttctcttggaacggttgattgtaaataggccacatccttgg
ggtcttcttattacattcattgagctgatcaaaaatccagcctttaaattctggaaccat
gagtttgtgcactgtgccccggaaattgaaaagttattccagtcggtggcacagtgctgc
atgggacagaagcaggctcaacaagtaatggaagggacaggtgccagttag
DBGET
integrated database retrieval system
