Salmo salar (Atlantic salmon): 106560234
Help
Entry
106560234 CDS
T04363
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106560234
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106560234
09142 Cell motility
04820 Cytoskeleton in muscle cells
106560234
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sasa00535
]
106560234
Proteoglycans [BR:
sasa00535
]
Extracellular matrix (ECM) proteoglycans
Others
106560234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106560234
NCBI-ProteinID:
XP_013978359
LinkDB
All DBs
Position
ssa01:102993150..103010125
Genome browser
AA seq
721 aa
AA seq
DB search
MVDSQNTAQRGIVNLDGYTLIGKLKDNPVLAVAFELQTMHIDCDVGRPQTCNDLSARTSV
EAAELQRASGPVGPPGPAGVPGIDGVAGERGDDGEDGPAGPDGDAGKLGSAGLPGEPGAD
GLTGPTGDEGPDGPLGQKGEPGKPGPRGLAGVGDDGPPGPPGPGGLPGDLGKGGPPGAMG
VRGPTGPGGSAGPRGAAGMQDLSAELCPGACPPGTPGHPGLPGMKGHKGVKGEGGEPGKQ
GHKGEEGDQGTTGDLGSQGPTGPQGIRGSTGMMGPKGGLGARGHDGDPGPQGVEGSTGDQ
GQRGVMGESGPKGDEGSQGGRGITGLPGPKGEGGLSGVDGREGIPGMPGGKGTIGKAGSP
GEVGLQGLPGLPGSPGSKGTGGEKGSSGEAGLLGTMGSAGKTGEQGKAGDLGPIGPIGGP
GDRGEQGPGGPPGKPGARGPKGDLGLPGVPGPPGLPGVKGERGEAGEGGPKGEQGEQGSE
GTSGDKGDVGDQGEAGPKGMVGNPGEPGNRGPEGSRGQPGIEGPAGTPGPRGMQGNRGAP
GIRGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESGAAGLPGKPGPPGPAGPP
GDSGFPGQAGARGLPGLKGPPGLLGLKGPKGEMGDRGDRGPTVRGAKGQPGPPGLPGEPG
KPGYGQEGRDGERGPPGVPGQAGVPGPPGNAGPNGYCDPSSCNLRPGDIDTSIKGPEGTR
T
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggtggactctcagaacaccgcccagagaggtatagtcaacctggatggatacacgttg
attggaaagctgaaggataaccccgttttagcagtggcatttgagctccaaacgatgcac
attgattgtgatgtggggcgaccacagacctgcaatgacctatcagccaggacgtcggtt
gaagcagcagaacttcagagggcctcaggccccgtcggccctccaggacccgcaggtgtc
ccaggaattgatggtgtcgctggtgagaggggagacgacggagaggatggccctgctggt
cctgatggagatgcaggtaaactaggctcagccgggttgccaggcgagcccggggctgat
ggtttgactggccctactggagatgaagggcctgatggtccccttggacagaaaggggaa
cccgggaaaccaggacctcgtggactagctggcgttggagacgatggaccccctggaccc
ccggggccaggaggacttccaggtgatttgggcaaaggtggaccccctggtgctatggga
gtgagaggaccaacaggacctggtggatcagcagggcctagaggtgcagcagggatgcag
gatttgagtgccgagctgtgtcctggtgcctgtccacctgggacacctggtcatcccggt
ctccctggcatgaagggtcacaaaggagtaaaaggggaaggaggagagcctgggaaacaa
gggcacaagggtgaagagggtgaccagggaaccacaggggacctcggatcccagggccca
acgggtcctcagggaatcagaggctccactggaatgatggggcccaaaggtggactggga
gcacgaggacatgatggagatccaggtccccaaggtgttgaaggatcaactggtgaccaa
ggccagaggggcgtgatgggcgagtctggtcctaaaggtgatgagggatctcaaggtgga
agaggaatcacaggtcttcctgggcccaagggagagggtggtttgtcaggagtggatggg
cgtgaaggtattcctggaatgccaggtggaaagggcaccattggcaaggctgggtctccc
ggggaggttgggcttcagggacttcctggattacctggttctcctggctctaaaggaact
ggtggagagaagggtagttctggagaggcaggtcttcttggcacaatgggatctgctggt
aaaacaggagagcaaggcaaagcaggagatctaggacccattggacccattggcggacca
ggagacagaggagaacaaggaccaggcggtccaccgggcaaaccaggagccaggggacct
aaaggggatcttggtcttcctggtgttcccggacccccaggcctccccggagtgaaggga
gagaggggagaagctggcgagggaggacctaaaggagagcagggagaacaaggttccgag
ggaacctctggagacaaaggagatgttggtgaccaaggggaagctggacccaaaggaatg
gttggaaacccaggagagcctggtaacagaggaccagagggtagcagagggcagcctggc
atcgagggcccagctggtactcctggaccacgtggcatgcagggcaacaggggcgcacca
ggaatcagggggtcacagggaccagcgggtaaagaaccaagcgatcaacacatcagacaa
gtctgcatgagagttatgcaagagcagctagcccagttggctgccagtctaaggaggccg
gagtctggagcagcgggcctgcctggtaagccagggccccctggtcctgccggaccccca
ggggacagtggcttccctgggcaggctggagcaagaggactgcctggcctcaaaggacct
ccaggacttctaggactcaaaggacccaaaggtgaaatgggcgacagaggagaccgaggt
ccaacggtgcgaggggccaagggccagccaggacctcccggtctaccaggtgagcccgga
aagcctggttacgggcaggagggacgtgatggcgagagaggacctccaggtgttcctggc
caggctggtgtacctgggcctcctggtaatgctggccccaacggctactgcgacccatcg
tcctgcaacctcagaccaggggacattgacaccagcatcaagggcccggagggaactaga
acctag
DBGET
integrated database retrieval system