KEGG   Salmo salar (Atlantic salmon): 106560234
Entry
106560234         CDS       T04363                                 
Name
(RefSeq) collagen alpha-1(IX) chain-like
  KO
K08131  collagen type IX alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04510  Focal adhesion
sasa04512  ECM-receptor interaction
sasa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    106560234
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    106560234
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106560234
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:sasa00535]
    106560234
Proteoglycans [BR:sasa00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   106560234
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 106560234
NCBI-ProteinID: XP_013978359
LinkDB
Position
ssa01:102993150..103010125
AA seq 721 aa
MVDSQNTAQRGIVNLDGYTLIGKLKDNPVLAVAFELQTMHIDCDVGRPQTCNDLSARTSV
EAAELQRASGPVGPPGPAGVPGIDGVAGERGDDGEDGPAGPDGDAGKLGSAGLPGEPGAD
GLTGPTGDEGPDGPLGQKGEPGKPGPRGLAGVGDDGPPGPPGPGGLPGDLGKGGPPGAMG
VRGPTGPGGSAGPRGAAGMQDLSAELCPGACPPGTPGHPGLPGMKGHKGVKGEGGEPGKQ
GHKGEEGDQGTTGDLGSQGPTGPQGIRGSTGMMGPKGGLGARGHDGDPGPQGVEGSTGDQ
GQRGVMGESGPKGDEGSQGGRGITGLPGPKGEGGLSGVDGREGIPGMPGGKGTIGKAGSP
GEVGLQGLPGLPGSPGSKGTGGEKGSSGEAGLLGTMGSAGKTGEQGKAGDLGPIGPIGGP
GDRGEQGPGGPPGKPGARGPKGDLGLPGVPGPPGLPGVKGERGEAGEGGPKGEQGEQGSE
GTSGDKGDVGDQGEAGPKGMVGNPGEPGNRGPEGSRGQPGIEGPAGTPGPRGMQGNRGAP
GIRGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESGAAGLPGKPGPPGPAGPP
GDSGFPGQAGARGLPGLKGPPGLLGLKGPKGEMGDRGDRGPTVRGAKGQPGPPGLPGEPG
KPGYGQEGRDGERGPPGVPGQAGVPGPPGNAGPNGYCDPSSCNLRPGDIDTSIKGPEGTR
T
NT seq 2166 nt   +upstreamnt  +downstreamnt
atggtggactctcagaacaccgcccagagaggtatagtcaacctggatggatacacgttg
attggaaagctgaaggataaccccgttttagcagtggcatttgagctccaaacgatgcac
attgattgtgatgtggggcgaccacagacctgcaatgacctatcagccaggacgtcggtt
gaagcagcagaacttcagagggcctcaggccccgtcggccctccaggacccgcaggtgtc
ccaggaattgatggtgtcgctggtgagaggggagacgacggagaggatggccctgctggt
cctgatggagatgcaggtaaactaggctcagccgggttgccaggcgagcccggggctgat
ggtttgactggccctactggagatgaagggcctgatggtccccttggacagaaaggggaa
cccgggaaaccaggacctcgtggactagctggcgttggagacgatggaccccctggaccc
ccggggccaggaggacttccaggtgatttgggcaaaggtggaccccctggtgctatggga
gtgagaggaccaacaggacctggtggatcagcagggcctagaggtgcagcagggatgcag
gatttgagtgccgagctgtgtcctggtgcctgtccacctgggacacctggtcatcccggt
ctccctggcatgaagggtcacaaaggagtaaaaggggaaggaggagagcctgggaaacaa
gggcacaagggtgaagagggtgaccagggaaccacaggggacctcggatcccagggccca
acgggtcctcagggaatcagaggctccactggaatgatggggcccaaaggtggactggga
gcacgaggacatgatggagatccaggtccccaaggtgttgaaggatcaactggtgaccaa
ggccagaggggcgtgatgggcgagtctggtcctaaaggtgatgagggatctcaaggtgga
agaggaatcacaggtcttcctgggcccaagggagagggtggtttgtcaggagtggatggg
cgtgaaggtattcctggaatgccaggtggaaagggcaccattggcaaggctgggtctccc
ggggaggttgggcttcagggacttcctggattacctggttctcctggctctaaaggaact
ggtggagagaagggtagttctggagaggcaggtcttcttggcacaatgggatctgctggt
aaaacaggagagcaaggcaaagcaggagatctaggacccattggacccattggcggacca
ggagacagaggagaacaaggaccaggcggtccaccgggcaaaccaggagccaggggacct
aaaggggatcttggtcttcctggtgttcccggacccccaggcctccccggagtgaaggga
gagaggggagaagctggcgagggaggacctaaaggagagcagggagaacaaggttccgag
ggaacctctggagacaaaggagatgttggtgaccaaggggaagctggacccaaaggaatg
gttggaaacccaggagagcctggtaacagaggaccagagggtagcagagggcagcctggc
atcgagggcccagctggtactcctggaccacgtggcatgcagggcaacaggggcgcacca
ggaatcagggggtcacagggaccagcgggtaaagaaccaagcgatcaacacatcagacaa
gtctgcatgagagttatgcaagagcagctagcccagttggctgccagtctaaggaggccg
gagtctggagcagcgggcctgcctggtaagccagggccccctggtcctgccggaccccca
ggggacagtggcttccctgggcaggctggagcaagaggactgcctggcctcaaaggacct
ccaggacttctaggactcaaaggacccaaaggtgaaatgggcgacagaggagaccgaggt
ccaacggtgcgaggggccaagggccagccaggacctcccggtctaccaggtgagcccgga
aagcctggttacgggcaggagggacgtgatggcgagagaggacctccaggtgttcctggc
caggctggtgtacctgggcctcctggtaatgctggccccaacggctactgcgacccatcg
tcctgcaacctcagaccaggggacattgacaccagcatcaagggcccggagggaactaga
acctag

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