Salmo salar (Atlantic salmon): 106561350
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Entry
106561350 CDS
T04363
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106561350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106561350
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106561350
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106561350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
106561350
NCBI-ProteinID:
XP_013980670
UniProt:
A0A1S3KQ05
LinkDB
All DBs
Position
ssa10:98479776..98518020
Genome browser
AA seq
2427 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVDRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYTIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSCNADLRGFAAQFVKQRLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGVSGEPFIQACVTFLKRRCPSIIGGLALEKDQPKSALLPPETMATMLGCLQS
CAGSVSQELSETILTMAANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQ
MDPLTAMGSLNLGSSATSHTQSMQSFPTPLGSAFSNPQSPAKAFPPLSNPSTPFGGIGSL
SSQLGNPGPLGSGIGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQSKMASDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLAFAQAQAQSQPPKAPQPGQPSTLVTTATTTTTVTKTTTITRPTPGSFKKDVPPSI
NTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWV
SQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMALNETYRNIKVLLTSDKAAANFSDRS
LLKNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSV
IFRPQNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLK
SLEEQLSAPKKEAKPPEEMLPVVSTGIQHFQIGMPLVGDFLPFAAAPSTPAATTTCSATG
PPTPQFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDR
SIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKN
SFAAALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRK
HARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQP
TGFLAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALAR
NSRDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQI
TRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLL
VDERSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNF
MMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILK
TDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHS
GEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLET
INFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLID
LFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRN
LILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPV
TFLSELRSNLQVGGATLGPWKYLQHNDTSLDQVSNEPGNRYNIQLINALVLYVGTQAIAH
IHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTML
YLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEI
EKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7284 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtggatcgtcacggc
cctgaggcagacaggcatttattacgctgtcttttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgatccaggagtgtgtttca
ctgatttcaaagccaaattttatttcaacactctgctacacaatcgacaatcccttgcac
taccagaagagtttgaagccttccacccacttgtttactcagttgagtaaagttctcaag
ctaagcaaggttcaagaagttatatttggccttgctttgctgaattcgtgcaacgcagac
cttcgtggttttgccgcgcagttcgtcaaacaaaggctcccggacctcctccgctcgtac
gtggacgcggaccttggaggaaaccaggaaggtggcttccaagatattgccatagaggtc
ctgcacctgctcctctcccatcttctgtttggccagaagggagccagcggggtcggacaa
gagcagattgacgcgttcctcaagacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgctataccctgaaaaacgggacattctgatggacaggattctg
ccagactcgggagagttagccaagaccatgatggagagttctctcgcagagttcatgcag
gaagttggctatggcttttgtgcaagtcttgatgaatgccgcaacataatcctacagtat
ggggtacgagaggttactgccagccaggtggccagggtcctggggatgatggctcgcaca
cactctggcttgtctgatggaatccccctacagtccatctcggctccgggcagtggcatt
tggagcgatggaaaggacaaaagtgatggctctcaggcgcacacctggaatgtagaagtt
ctaattgatgtggtcaaagaagttaaccccaatctgaactttaaagaggtgacctacgag
ctcgatcaccctggcttcataatccgggacagcaagggactgcagatggtggtgtatggg
atccagaggggcctgggcatggaggtgttccctgtcgacctaatctaccggccctggaag
catgctgaaggacagctgtcatttatccagcactccctcatgagcccagatgtgttctgc
tttgctgactacccctgccacaccgtagcaatcgacatactgaaggccccacctgaggac
gataaccgagagatagccacctggaagagcctggacctggtggaaagcctcctgcgcctt
tctgaggtgggccagtacgagcaggtaaagcagctcttcagcttccccatcaagcactgt
cccgacatgctggtgctggcgctgctgcagataagcacctcctggcacaccctgcgccac
gagctcatctccaccctcatgccaatcttcctgggcaaccaccccaactctgccatcatc
ttacactacgcctggcacggacagggccagtccccctctatccggcagctgatcatgcac
tctatggctgagtggtacatgagaggggagcagtacgaccaggccaagctgtcccgcatc
ctggatgtggcccaggacttgaagtctctatctatgctgctaaatggtacaccatttgcc
ttcgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctgactgacaaaatccgagagcatggggtgagtggtgagcccttcatccaggcgtgtgtt
acgttcctgaagagacgttgtccctctatcattggtggtctggccctagaaaaggaccag
cccaaaagcgccctccttcccccggaaacgatggctaccatgctgggttgtctgcagtcc
tgtgcagggagcgtctctcaagagctctccgagactatcttgaccatggctgccaactgc
agcaacgtcatgaataaagcccgccagccaccaccaggggtcatgccaaagggacgtgct
cccagcaccagcagcctagatgcaatttcccctgtgcaagtgtcggtgtctcctctccag
atggatcccctgacagccatgggctccctcaacctgggcagctctgccacctctcacaca
cagagtatgcagagctttcccaccccgctgggctctgctttcagcaacccccagtcccca
gctaaggccttccctccactgtccaaccccagcacaccatttggggggattggaagtctc
tcttcacagctaggtaacccaggtccgctgggatcaggcattggctctggtattggttct
ggtcttggaatgccagcggtgagcagtgatccgtttgggacgaggaagatgagcacacca
ggcctgaatccgcccacctttcagcagagtaagatggcctctgacctatctcaggtgtgg
ccagaggctaaccagcactttagtaaggagattgacgatgaggctaacagctacttccag
cgcatctacaaccaccccccacaccccaccatgtctgtggatgaggtgctggagatgctg
cagaggttcaaggactccaccatcaagcgagagcgtgaggtctttaactgtatgctgagg
aacttgttcgaggagtaccgcttcttcccccagtaccctgacaaggagctacacatcacc
gcctgcctgttcggggggatcattgagaaaggccttgtcacctacatggccctcggactg
gccctccgatatgtactcgaagccttgaggaaaccatttgggtccaaaatgtattatttt
ggaatcgctgctctagatagattcaaaaatagactgaaggactatccccaatattgtcag
cacttggcctcaatcggccactttctgcaattcccccatcatttacaagagtgcgtgcag
tatatcgagtatggccaacagtcacgggaccctccggtgaagatgcagggatccatcacc
accccaggaagcctggcgtttgctcaagctcaggcccagtctcagcctcccaaagccccc
cagcctggacagcccagcaccctggtcaccacagctaccaccaccaccactgtcaccaaa
accactaccatcacccggcctacccctggcagcttcaagaaggatgtgccgccctccatc
aacaccacaaacatcgacacacttctagtagcaacagaccaaaccgagaggattgtggaa
cccccagaaaatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaac
atgacacagaaggttgaggagttaaaggagactgtcaaagaggagttcatgccctgggtc
tctcagtatctggtcatgaagagggtcagcattgagcccaacttccacagcctgtactcc
aacttcctggacaccctgaagaacccagagtttgtcaaaatggccctgaatgaaacttac
agaaacatcaaggttctccttacctctgataaggcagctgcaaacttctctgatcgatcc
ctactgaagaatttgggtcactggcttggtatgatcactctggctaaaaacaagcccatc
ctgtacactgatttggaggtgaaatccctcttgttggaagcgtatgtcaaggggcagcag
gagctactctatgtggtcccgtttgtggccaaagtcctggaatccagtttacgtagcgtg
attttccgaccccagaatccctggacgatggccatcatgaatgttctggcagagctgcat
acggagcatgatctcaagctgaacttgaagtttgagattgaggtgctgtgtaagaattta
tcattggacatcaatgacctgaagcctggcacccttctgaaggacaaagacaagttgaag
agcctggaggaacagctctctgcaccaaagaaagaggccaagccccctgaagaaatgctc
cctgttgttagcacaggtatccagcactttcaaattgggatgccccttgtcggagacttt
cttccatttgcagctgcgccatccactcctgccgcaaccaccacttgctcagctactggg
ccccctaccccacagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcc
cctcacatcaatatcaacatcaacatccccttgctccaagcccaccctcagctgaagcag
tgtgtgagacagtccattgagcgggccgtgcaggagctcgtccaccctgtggtggaccgt
tccatcaagatcgccatgactacctgcgagcaaattgtcaggaaggactttgccctggac
tccgaggagtcgcgcatgcgtgtggccgcccatcacatgatgcgtaacctgaccgccggc
atggccatgatcacctgccgggagcccctgctcatgagcatcgctaccaacctgaagaac
agctttgccgcagccctcagggcccccaccccccagcagagagagatgatggaggaggct
gctgccagggttgcccaggacaactgtgagctggcctgctgcttcatccagaagactgcg
gtggagaaggctggcccagagatggacaagagactggccacggagtttgagctgaggaag
cacgcccgtcaggagggtcgtcgctactgcgaccctgtggtgctgacctaccaggcagag
cgcatgccagagcagatcagactcaaggttggaggagtagaccccaaacagctggcagtg
tacgaggagtttgccaggaatgttccaggcttcctacccagcaacgacctgtctcagccc
actggattccttgcccagcccatgaagcaacaggcatgggccacagacgacgtggctcag
atctatgacaagtgcatggcggacctggagcagcacctccatgccatccccccagcgctg
gccatgaacccccagactcaggccctgcgcagtctgttggaggcagtggccctggccagg
aactcccgggatggcattgctgctctcggcctgctgcagaaggctgtggagggtctgctc
gatgccaccagtggtgccgatgctgacctgctcctgcggtacagagagtgtcacctgctg
gtgctcaaagccctccaggacggccgggcatacggaccacaatggtgcaacaaacagatt
accaggtgcctgattgagtgccgtgatgagtacaagtacaacgtggaggctgtggagctg
ctgatcagaaaccacctggtcaacatgcagcagtacgacctgcacctggcacagtctatg
gagaacggtctgcactacatggcagtggcatttgccatgcagctggtaaagctgctgctg
gtggatgagcgcagtgtgagccacatcacagaggccgacctgttccacaccatcgagact
ctgatgagaaccagcgcacactccagggccaatgcacctgaggggcttcctcagctgatg
gatgtagtccgctctaactatgaggccatgatcgatcgggcccatggaggacccaacttt
atgatgcactctggcatctcccaagcgtctgagtacgacgacccgccgggcctgagggag
aaggcagagtacttgctgagggaatgggtcaacctgtaccactctgcagccgccggccgg
gacagcaccaaggccttttctgcttttgtgggccagatgcaccagcagggcattctgaag
actgatgacctgatcacgcgtttcttccggctgtgcacagagatgtgtgtggagatcagc
taccgcgcccaggccgagcagcagcacaatcctgcggccagcgccgccatcatcagagcc
aagtgctaccacaacctggacgcctttgttcgcctcatcgctctgctggtcaagcactct
ggagaggccaccaacacagtcaccaagatcaacctgctcaacaaggttctaggtattgtg
gttggtgtgctgatccaggaccatgatgtaagacagacagagtttcagcagttgccttac
caccgcatcttcatcatgctgctgctcgagctcaatgcccccgagcatgtgctggagacc
atcaacttccagaccctcaccgccttctgcaacactttccacatcctgaggcctactaaa
gcccctggctttgtctacgcttggctggagttgatctctcaccggatcttcatcgccagg
atgctggcacacaccccacagcagaagggttggcccatgtatgcccagctgctcattgat
cttttcaaatacctagcgcccttcctgaggaatgttgagctcaacaaacctatgcaaatc
ctctacaagggtaccctgcgtgtcctgcttgtcctgctgcatgacttcccagagttcctg
tgtgactaccactacggcttctgtgacgtcatcccgcccaactgcatccagctccgcaac
ctgatcctgagtgccttcccacgcaatatgagacttccagaccccttcacacccaatctg
aaggttgacatgctcagcgagatcaacattgctccgcgcatcctcactaacttcaccgga
gtgatgccctctcagttcaagaaggatctggactcgtacctgaagacgcgctcccccgtc
accttcctctctgagctccgcagcaatctgcaggtagggggcgccactctgggtccctgg
aagtatttgcagcacaacgacacatctttagaccaggtgtcaaatgagccaggcaatcgt
tacaacatccagctgatcaatgcactggtgctgtatgtggggacccaggccatcgcacac
atccacaacaagggcagcactccctccatgagcaccatcactcactcagcccacatggac
atcttccagaacctggctgtggacctggacactgaggggcgctatcttttcctgaatgcg
attgctaatcagctgcgctacccaaacagccacacccattacttcagctgcaccatgctc
tacctgtttgctgaggccaacacagaggcaatccaggagcagatcaccagggttcttctg
gagaggctgattgtgaacaggcctcacccctggggactgctcatcacgttcatcgagctc
atcaagaaccctgccttcaagttctggagccacgactttgtgcactgtgccccggagatc
gaaaagttgttccagtcagtggctcagtgctgcatggggcaaaagcaggctcagcaggtg
atggagggcactggtgccagttag
DBGET
integrated database retrieval system
