Salmo salar (Atlantic salmon): 106561912
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Entry
106561912 CDS
T04363
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
106561912
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sasa04040
]
106561912
Ion channels [BR:
sasa04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
106561912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
106561912
NCBI-ProteinID:
XP_013981736
LinkDB
All DBs
Position
ssa11:7571981..7642918
Genome browser
AA seq
2090 aa
AA seq
DB search
MFSWVVKGVPQPPGKLGDEEKTNAPLAPVKQVTFKEEKKQEAPKPAKAKEEEVAEENGGE
AGVLTWITHGFANSLPQPAGTPRLGRANTEPSTKQEENRQGSRVIGWIAQGLASVVPQPE
LKNMEEVEPAETTEIAEVIKVPEVKKKPTIAEVSKAPEVKKKPSIAEASNAPEVKKTPSI
AEARKVPEVKKTPSVHAIQDVPDAEPLPHIPVVEVLSDEEPQEEKGIPPRVYEWIKQGFE
KVVPQPADINRDISAKAPCPQKVTSKSPETEEEAKANHDSEEEKQPNVVGWIVQGFGRML
PQPVLTPSGSENAVQNILILQGHEDMVLEEVDPDWEEKENKVAQGAALLQALPSLKPQQV
LEMQQEAEDAETQTERWTPLIESIKKEAEEAAVAKVEEKLQQQLNEARMAEEVARQAAEM
AVRQLEEEQAASAQRATDSQQEADGEQLPNIQEEENEEDPELQMLQEESDESMDIKSPEE
NKITEENKISIQINFNEDKKVASEENIVTEEVTVFEKIIPKTEDNMTTQDSTISETKIIE
VTIIEEMKNLEQNTATVACKISNESQFHEDTKVVPEENTITDDKISEEKNITEENENPDK
AKVSAVTDVEKMKIIEQNMTTQDNKISQEKNVHENQKVAADENVVTEENTPMVTVNEVIR
NVEQNTTAVEDIVRGEEISETKVTEENKSPDNNKITEVTDEVMEVIEEIIQNAGENTTKQ
HNKMSEEKKVTVEYERPDKNKITKVTAVEKIKIEESILTPDIKIPEEKHVNKDKTSSDRN
IAVGEMAVGETISAETKVAEKNENPDKDKLTEVTVVEKIKIVEENTLMQDNKIFEDKNIN
EDKKVAAEENSTVSKETKVKEVTVTEEYDQNMTTVEDIVRGEEISESKVTAENKSPDNNK
ITEVTDEVMEVIEEIIQNAGENTTKQDNKMSEEKKVTVEYERPDKNKITKVTAVEKIKIE
ESILTPDIKIPEEKHVNKDKTSSDRNIAVGEMAVGETISAEAKVAEENKSSEENKIPAVT
DDITVIEEIKIDEDITTTQDNKIYKDNKITEELTVIVKIKMNEQNTMREISNKKTIDEAR
KVAEENIVTVEKKISQENRSPGKNKIAEVSVIIIITEDDKIPEEKTVNQDIKVAEDNIVV
EDYIDALELTEDNKITELKLLHESDESVENKSPEKNKVIEVTAIESILSVEDNTLMDIVV
AEDNEISDDNKAKAVEPKVENKITEVDLKRCLMDVCPAEGLPEVEAEAESVEPSPPVSPP
REASPEPEPEPQNKQSPPVTEAAAVTEQPEPADQKAPPTAATQEEEGADEAGCEGSVGKD
KGGNVLPVVKVEDVDRDVGMGGGCNIPQIITSQDPLSISLTVSLAPGTKRSKAVAADGSL
LPVEERSAEEDDVFGVDDLEMQTGLLTVEDEDRPTSAASYGSVIVQERVTTLVKLFKART
VRKKEKLMDPDDSEEDSPQTSPAKAPPPPPPPEEAKDISAPVEEEEVEEYWDFYGYPIKI
LKLPKMPPLPSWLQTIVDFRFPSSIDPYTDLVYVVWLFFVMMAWNWNVWLIPVRWAFPYQ
TADNIYWWLFMDYTCDLIYITDILVFQPRLQFVRGGDIVCDKKDMRDNYMTTERFKMDCI
SMFPMEIFYYFTGVNSLLRFPRLLKYMAFFEFNDRLEAVMKKAYIYRVILTTSYLLYSLH
INACLFYWGSDYEGLGSTKWVYNGKGNSYIRCYYFAVKTLITIGGLPDPTTVFEITFQLV
NYFVGVFAFSIMIGQMRDVVGAATAGQNYYRACMDNTIKYMTSYHIPTEVQNRVKTWYDY
TWQIQGMLDEQELLIQLPDKMRMDMAVDVNYSIVSKVALFQGCDRQMIFDMLMRLKSVVY
LPGDFVCKKGEIGREMYIIKQGEVQVVGGPDLKTVFVTIRAGSVFGEISLLAGGGGNRRT
ANVMAHGFANLFILDKRDLSDILVHYPESQKLLRKKAKKMLTKDQKPEEKAEAKETAEVI
PDRPETPKLFKAALVVTEQAGIKGTFAKLKEGYKPAETESSGLPISPPSPMVHHRSPIAP
TDARVEDDEDAVSETTDSMMLIRMTRHHEGEELLSVEQKPGDEEEEMEKK
NT seq
6273 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctgggtggtgaaaggggttccccagcctcctgggaaactaggagatgaggag
aagaccaacgccccacttgcaccagtaaaacaagtaacattcaaagaagagaagaaacaa
gaagctccaaaacctgccaaggccaaagaggaggaggtcgccgaagagaatggtggtgag
gctggagtgttgacttggatcacccatggctttgctaattctcttccccagcctgctggg
acaccccggctaggcagagccaacactgagccctccaccaaacaggaggagaacaggcag
gggtcgagagtcatcggctggattgcccagggattggccagtgtggttccccagcctgaa
ttaaaaaacatggaggaggtggagcctgcagagacaacagagattgcagaggtgatcaag
gtgccggaggttaagaaaaaacctaccattgcagaggtgagcaaggcgccggaggttaag
aaaaaacctagcattgcagaggcgagcaatgcaccggaggttaagaaaacacctagcatt
gcagaagccagaaaggtgccggaagttaagaaaacacctagcgtgcatgctatccaagat
gtcccggatgcagagcctcttcctcatattcctgtggtggaggttctgtcagatgaagag
cctcaagaagagaagggaatcccacccagggtgtatgagtggatcaaacagggttttgag
aaagtggtaccccagccagctgacatcaacagagacatctcagcgaaggccccctgccca
cagaaagtgacctccaaatctccggaaactgaagaggaggccaaagcaaatcatgacagt
gaggaggagaaacagcccaatgtggtgggctggattgttcagggcttcggtcgtatgtta
cctcagcctgtcctgactcccagtggatcggagaacgctgtgcagaacatcctcatcctg
caaggccatgaagacatggttctggaggaggtggacccggattgggaggagaaggagaac
aaagtggctcagggagcggccctgctccaggccttaccctcactcaaaccccagcaggtt
ctagaaatgcaacaagaagcagaagatgcagagacacagacagagagatggactcccctc
atagagagcataaagaaagaggcagaggaggctgctgtggcgaaagtggaggagaagctg
cagcagcagttaaacgaagcaaggatggctgaggaggtggccagacaggcggctgagatg
gcagttagacaactagaggaggagcaggccgccagtgcccagagggccacagactcacag
caagaggctgatggagagcaactgcccaatatccaggaggaagagaacgaggaagaccct
gagttgcagatgcttcaggaggagagcgacgagagcatggacattaagagtcctgaagag
aataagataacagaggaaaataagatatctattcagattaatttcaatgaggacaaaaag
gttgcatctgaggagaatatagtaacagaggaggttacggtatttgagaaaataattcca
aaaactgaagataatatgactacacaggatagtacgatatctgagactaaaataatagag
gtcacaatcattgaggaaatgaagaaccttgaacagaatacggccacagtggcgtgtaag
atatcgaatgagagtcaattccacgaagacacaaaagttgttcctgaagagaacacaatc
actgacgataagatatctgaggagaaaaacataacagaggaaaatgaaaatccagacaag
gctaaagtatctgcggttacagacgttgagaaaatgaagatcattgaacagaatatgacc
acacaagacaataagatatctcaggagaaaaatgtacatgaaaaccaaaaagttgctgct
gatgagaatgtagtcactgaagagaatacacctatggtaacagtcaatgaggtaatcagg
aatgttgaacagaatacaacagcagtggaggatatagtcagaggagaggagatatctgag
actaaagtaacagaggaaaataaaagtcctgacaataacaaaataacagaggttacagat
gaggttatggaggtcattgaggaaatcattcagaatgctggagaaaatacaactaaacag
cacaataagatgtcagaggagaaaaaagttacagtggaatatgaaagacctgacaagaat
aagataacaaaggttactgccgttgagaaaattaagattgaagagagcatcctaacaccg
gatatcaagatacctgaggaaaagcatgtaaataaggacaagacatcttctgataggaat
atagcggttggagagatggccgttggagagacgatatctgcggagactaaagtagcagag
aaaaatgaaaatcctgacaaggacaaactaacagaggttaccgtcgttgagaaaattaag
attgttgaagagaatacccttatgcaagacaataagatatttgaggacaaaaatataaac
gaagacaaaaaagttgctgctgaggagaatagtacagtctctaaagagactaaagtaaaa
gaggttacagtcacagaagaatatgatcagaatatgaccacagtggaggatatagtcaga
ggagaggagatatctgagtctaaagtaacagcggaaaataaaagtcctgacaataacaaa
ataacagaggttacagatgaggttatggaggtcattgaggaaatcattcagaatgctgga
gaaaatacaactaaacaggacaataagatgtcagaggagaaaaaagttacagtggaatat
gaaagacctgacaagaataagataacaaaggttactgccgttgagaaaattaagattgaa
gagagcatcctaacaccggatatcaagatacctgaggaaaagcatgtaaataaggacaag
acatcttctgataggaatatagcggttggagagatggccgttggagagacgatatctgcg
gaggctaaagtagcagaggaaaataaaagttctgaggaaaataagattccagcggttaca
gacgacattaccgtcattgaggaaattaagatcgatgaagacattacgaccacacaggat
aataagatatataaagacaataaaataacagaagagttgacagtcattgtgaaaattaaa
atgaatgaacagaatactatgcgggaaatatccaataagaaaacaatcgatgaagccaga
aaagttgcagaggagaatatagtaactgtagagaagaagatatctcaggagaacagaagt
cctgggaagaataagatagcagaagtttcagtcattattataatcactgaagacgataaa
ataccagaggagaaaacggtcaaccaagacataaaagttgccgaggacaatattgtcgtt
gaggactacattgacgctttggagcttacagaggacaataagatcactgagttgaaactg
cttcacgagagcgacgagagcgtggagaataaaagtccagagaaaaataaagtcatagag
gttactgccattgagagtattctgagcgttgaagacaatactctaatggatattgtagtt
gctgaagacaatgagatatctgacgacaacaaagctaaagctgtggagcctaaagtggag
aataagatcactgaagtggacctgaaaaggtgcctgatggatgtgtgtccagccgagggg
ttgcccgaggttgaggcagaggcggagtcagtcgaaccaagccccccagtgtctcccccc
agagaggcctcccctgaaccagaaccagagccacaaaataaacagtctcccccagtgaca
gaggccgcggcagtaaccgaacagccagaaccagccgaccagaaggctccacctactgcc
gcaactcaggaagaggaaggtgccgacgaagcagggtgtgaagggagcgttggtaaggac
aaaggaggtaatgtgctgccagtggttaaagtggaggatgtggacagagacgtagggatg
ggagggggttgcaacatcccccagatcatcacctcccaggaccccctgtccatctctctg
accgtgtctctcgcccccgggaccaagcgcagcaaagctgtggctgcagatggctcgctc
ctcccggtagaagagagaagtgctgaagaggatgatgtttttggtgttgatgacttggag
atgcagactggcctcctgactgtggaagatgaggatcgtccaacatcagcggccagctat
ggcagtgtgattgtccaagagagagtgactacactggtcaagctgtttaaggcgaggacg
gtccgcaagaaggaaaaactgatggaccctgacgactctgaggaagacagccctcaaacc
tccccagccaaggcgccccctccccctcctcccccagaagaggccaaggacatctcagcc
ccggtggaggaggaagaggtggaggagtactgggacttctatggatacccaatcaaaatc
ctcaaacttcccaaaatgcccccacttcctagttggcttcaaaccatagtggactttcgt
ttcccttccagcatcgacccttatactgaccttgtctacgtggtgtggctgttctttgtg
atgatggcgtggaactggaatgtgtggctgatcccagtgcgctgggccttcccctaccag
actgcagacaacatctactggtggctttttatggactacacctgtgaccttatttacatc
accgacatcctggtctttcagccccgcctgcagtttgtacgcggaggagatattgtgtgt
gacaaaaaggacatgagagacaactacatgacaacagaacgattcaagatggattgtatc
agtatgttccccatggagatattttactactttaccggagttaactccctcctcagattc
ccccgcctactgaagtacatggctttctttgagttcaacgaccgtttggaagcagtaatg
aagaaagcctacatctacagagtgatcctgaccacttcctacctgttgtattctctccac
atcaacgcctgtctgttctattggggttctgactatgaggggctcgggtccactaagtgg
gtctacaacggcaaagggaacagttatatccggtgttactactttgctgtaaagaccctg
atcaccatcggtggtctcccggacccaaccaccgtgtttgagatcacattccagctagtc
aactattttgttggcgtctttgctttctccatcatgattggtcagatgagagatgtggtg
ggggctgccacagcgggacagaactactaccgggcctgtatggacaacaccatcaagtac
atgacctcctaccacatccccacagaggtccagaaccgagtcaagacctggtacgactac
acctggcaaatacagggcatgctggatgagcaggagctgttgatccagctgccagataag
atgaggatggacatggctgtggatgttaactactccattgtgagtaaagtggccctgttc
cagggctgtgacagacagatgatctttgacatgttgatgaggctcaagtctgtggtctac
ctgcctggggactttgtctgtaaaaagggtgagatcggcagggagatgtatatcatcaag
cagggggaggttcaggtggtgggaggacctgatttgaagactgtgtttgtgacaatcagg
gccggctctgtgtttggagaaatcagcttgctggcagggggcggtgggaacagacgcacg
gccaatgtgatggctcacggattcgctaacctcttcatcctggataagcgggacctctca
gacatcctggtgcactaccccgagtcccagaaactcctccgcaagaaggccaagaaaatg
ctgacgaaggatcagaagccagaggaaaaggcagaggcgaaggagactgccgaggtgatc
ccagacaggccagagacccccaagctgttcaaagcagccctggtggttacagagcaggca
ggcattaagggcaccttcgccaagctgaaagagggctacaaacctgccgagactgagtcc
tctggcctccccatatctcctccctccccgatggtgcaccatcgctcccccatcgcccct
acagatgcccgggtcgaggatgacgaagatgcagtttccgagacgaccgacagcatgatg
ctcatccgcatgacacgccatcacgaaggcgaggagctcctgtctgttgagcagaagcct
ggagatgaagaggaggagatggagaagaagtag
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integrated database retrieval system
