KEGG   Salmo salar (Atlantic salmon): 106566732
Entry
106566732         CDS       T04363                                 
Name
(RefSeq) collagen alpha-3(IX) chain-like
  KO
K08131  collagen type IX alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04510  Focal adhesion
sasa04512  ECM-receptor interaction
sasa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    106566732
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    106566732
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106566732
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:sasa00535]
    106566732
Proteoglycans [BR:sasa00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   106566732
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 106566732
NCBI-ProteinID: XP_013990544
UniProt: A0A1S3LJ50
LinkDB
Position
ssa13:20618064..20643695
AA seq 678 aa
MAMFSALGLLLLCQLLTSSTAQRPGPRGAVGPPGPPGPDGKDGTDGKDGPAGLSGKAGPK
GKAGGAGGPGNPGLPGLPGVDGLTGTDGPAGKDGPPGEVGDAGPSGPGGPPGRGRPGAPG
PPGANGLEGGIGPQGPAGPEGLPGLSGPPGPDGPPGLPGALPDGSGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGDKGELGKDGEKGNAGPPGPPGIPGTVGLQGPRGLRGLQGPMGAVG
DRGLPGFRGKPGTAGIIGKTGDAGEKGPEGFRGPKGEIGKIGPKGVSGGAGPKGEPGIPG
RDGKDGTQGLDGEKGDAGRNGVPGEKGPNGLPGLQGKAGAKGAKGGVGDPGEMGEAGPSG
EPGIPGDIGIPGERGEAGPRGVAGGVGPVGNIGVQGSKGFQGIKGALGDPGLPGPTGIRG
GFGERGPVGASGTKGDMGMAGADGLPGENGEPGPFGPVGQKGESGKRGELGPKGVVGPQG
ELGARGDPGKPGLMGFQGEQGLPGIAGKIGVPGKLASEQHIRELCGSMIDDQIAQLAANL
RRPLSPGQVGRPGAAGPPGKVGETGSIGHPGSRGPPGYRGLPGDLGDPGPRGDLGEQGDK
GPIGKAIEGPIGDQGYQGIPGVLGIVKDGRDGSPGDPGEPGEAGRTGRTGHSGSPGICDT
TACQGANVHGKTSNPKNH
NT seq 2037 nt   +upstreamnt  +downstreamnt
atggctatgttttcagctctcgggctgctcttgctgtgccagcttttgacatcatctaca
gcccagagacccggcccacgaggagcagtcgggccgccaggacccccgggacccgatgga
aaggatggcactgatggcaaagatggcccagctggactttcaggaaaagctggacccaag
gggaaagcagggggagcaggaggaccagggaacccaggcctgcctggcctccctggggtg
gatggattgacaggtaccgatgggcctgctgggaaagacggtcctccgggggaggtgggc
gatgctggaccttccgggccaggtggacctcctggcagagggagaccaggagctccaggg
ccacctggagccaatgggcttgagggcggaatcgggccacagggaccagcgggccctgag
ggtcttccaggattgtccgggcctcccggccctgatggaccaccaggtcttcctggggct
ctccctgatggcagtggagatctgttgtgtcctgcaatctgtcctcctggcccgtctggc
cctccaggaatgcctggattcaagggtcacacagggcacaaaggagataagggagagctc
gggaaagatggagagaagggtaatgctggcccacctggtcctccagggattcctggcact
gtcggcctgcagggtcctcgtggtttgaggggacttcagggcccaatgggggcagtagga
gacaggggtttaccaggtttccgaggcaaacctggtactgctggcatcatcggcaagaca
ggtgatgctggagagaaaggaccagagggatttagagggccaaagggagagattggcaaa
attggtccaaagggagtttctggcggagcaggacccaaaggggagcctggcatccctggc
agagacgggaaagatggcacccagggactggacggcgagaagggcgacgctggacggaat
ggggtacccggtgagaaaggacccaacggccttcctggtttacaaggaaaggctggcgca
aagggcgccaaaggaggagttggtgacccaggagagatgggagaggcagggccatctgga
gagccaggtattcctggcgacattggtatcccaggagagaggggcgaggcgggacccaga
ggagtggctgggggcgtcggaccagtgggcaacatcggggttcagggcagcaaaggcttc
cagggaataaagggggctctgggtgaccctggccttcccggaccaaccgggattcgcggc
ggatttggtgagaggggtccagtcggagcatcaggcactaaaggagacatgggcatggca
ggagctgatggtttgcccggggagaatggagaacctggtccatttggtccagttggccaa
aaaggagagtctgggaagcgtggcgagctgggacctaaaggtgtggtgggaccacaggga
gagctcggagccagaggggatcctggaaaaccaggcctaatgggcttccagggtgaacag
ggtctgcctggaatcgctggcaagattggtgttcccggtaaactggcaagcgaacagcac
attagagaattgtgtggctctatgattgatgatcagattgcacagctggctgccaacctc
agaaggcccctgtcccctggccaagtgggtcgccccggtgctgccggacctccagggaaa
gtaggagagactgggtctatcggtcaccccggctcccgtggacctcctggctacagaggg
ctgcctggagacctgggagaccccggtcccagaggtgatcttggtgaacagggtgacaag
ggacccatcggaaaggccatcgaagggcccattggagaccaaggataccaaggtatccca
ggagtgcttggaatcgtcaaagatgggcgtgacggatccccaggagatccaggggagccc
ggagaggcaggtaggacaggaaggactgggcactcgggctccccaggaatctgtgacact
accgcctgccagggtgcaaatgtccatgggaaaacctccaatcccaagaaccattaa

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