Salmo salar (Atlantic salmon): 106566732
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Entry
106566732 CDS
T04363
Name
(RefSeq) collagen alpha-3(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106566732
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106566732
09142 Cell motility
04820 Cytoskeleton in muscle cells
106566732
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sasa00535
]
106566732
Proteoglycans [BR:
sasa00535
]
Extracellular matrix (ECM) proteoglycans
Others
106566732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106566732
NCBI-ProteinID:
XP_013990544
UniProt:
A0A1S3LJ50
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Position
ssa13:20618064..20643695
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AA seq
678 aa
AA seq
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MAMFSALGLLLLCQLLTSSTAQRPGPRGAVGPPGPPGPDGKDGTDGKDGPAGLSGKAGPK
GKAGGAGGPGNPGLPGLPGVDGLTGTDGPAGKDGPPGEVGDAGPSGPGGPPGRGRPGAPG
PPGANGLEGGIGPQGPAGPEGLPGLSGPPGPDGPPGLPGALPDGSGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGDKGELGKDGEKGNAGPPGPPGIPGTVGLQGPRGLRGLQGPMGAVG
DRGLPGFRGKPGTAGIIGKTGDAGEKGPEGFRGPKGEIGKIGPKGVSGGAGPKGEPGIPG
RDGKDGTQGLDGEKGDAGRNGVPGEKGPNGLPGLQGKAGAKGAKGGVGDPGEMGEAGPSG
EPGIPGDIGIPGERGEAGPRGVAGGVGPVGNIGVQGSKGFQGIKGALGDPGLPGPTGIRG
GFGERGPVGASGTKGDMGMAGADGLPGENGEPGPFGPVGQKGESGKRGELGPKGVVGPQG
ELGARGDPGKPGLMGFQGEQGLPGIAGKIGVPGKLASEQHIRELCGSMIDDQIAQLAANL
RRPLSPGQVGRPGAAGPPGKVGETGSIGHPGSRGPPGYRGLPGDLGDPGPRGDLGEQGDK
GPIGKAIEGPIGDQGYQGIPGVLGIVKDGRDGSPGDPGEPGEAGRTGRTGHSGSPGICDT
TACQGANVHGKTSNPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctatgttttcagctctcgggctgctcttgctgtgccagcttttgacatcatctaca
gcccagagacccggcccacgaggagcagtcgggccgccaggacccccgggacccgatgga
aaggatggcactgatggcaaagatggcccagctggactttcaggaaaagctggacccaag
gggaaagcagggggagcaggaggaccagggaacccaggcctgcctggcctccctggggtg
gatggattgacaggtaccgatgggcctgctgggaaagacggtcctccgggggaggtgggc
gatgctggaccttccgggccaggtggacctcctggcagagggagaccaggagctccaggg
ccacctggagccaatgggcttgagggcggaatcgggccacagggaccagcgggccctgag
ggtcttccaggattgtccgggcctcccggccctgatggaccaccaggtcttcctggggct
ctccctgatggcagtggagatctgttgtgtcctgcaatctgtcctcctggcccgtctggc
cctccaggaatgcctggattcaagggtcacacagggcacaaaggagataagggagagctc
gggaaagatggagagaagggtaatgctggcccacctggtcctccagggattcctggcact
gtcggcctgcagggtcctcgtggtttgaggggacttcagggcccaatgggggcagtagga
gacaggggtttaccaggtttccgaggcaaacctggtactgctggcatcatcggcaagaca
ggtgatgctggagagaaaggaccagagggatttagagggccaaagggagagattggcaaa
attggtccaaagggagtttctggcggagcaggacccaaaggggagcctggcatccctggc
agagacgggaaagatggcacccagggactggacggcgagaagggcgacgctggacggaat
ggggtacccggtgagaaaggacccaacggccttcctggtttacaaggaaaggctggcgca
aagggcgccaaaggaggagttggtgacccaggagagatgggagaggcagggccatctgga
gagccaggtattcctggcgacattggtatcccaggagagaggggcgaggcgggacccaga
ggagtggctgggggcgtcggaccagtgggcaacatcggggttcagggcagcaaaggcttc
cagggaataaagggggctctgggtgaccctggccttcccggaccaaccgggattcgcggc
ggatttggtgagaggggtccagtcggagcatcaggcactaaaggagacatgggcatggca
ggagctgatggtttgcccggggagaatggagaacctggtccatttggtccagttggccaa
aaaggagagtctgggaagcgtggcgagctgggacctaaaggtgtggtgggaccacaggga
gagctcggagccagaggggatcctggaaaaccaggcctaatgggcttccagggtgaacag
ggtctgcctggaatcgctggcaagattggtgttcccggtaaactggcaagcgaacagcac
attagagaattgtgtggctctatgattgatgatcagattgcacagctggctgccaacctc
agaaggcccctgtcccctggccaagtgggtcgccccggtgctgccggacctccagggaaa
gtaggagagactgggtctatcggtcaccccggctcccgtggacctcctggctacagaggg
ctgcctggagacctgggagaccccggtcccagaggtgatcttggtgaacagggtgacaag
ggacccatcggaaaggccatcgaagggcccattggagaccaaggataccaaggtatccca
ggagtgcttggaatcgtcaaagatgggcgtgacggatccccaggagatccaggggagccc
ggagaggcaggtaggacaggaaggactgggcactcgggctccccaggaatctgtgacact
accgcctgccagggtgcaaatgtccatgggaaaacctccaatcccaagaaccattaa
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