Salmo salar (Atlantic salmon): 106573200
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Entry
106573200 CDS
T04363
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106573200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106573200
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106573200
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106573200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
106573200
NCBI-ProteinID:
XP_014003459
UniProt:
A0A1S3MK33
LinkDB
All DBs
Position
ssa16:complement(12564722..12582739)
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AA seq
2476 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSSHLFTQLSKVLKLS
KVQEVIFGLALLNSCNADLRGFAAQFVKQKLPDLLRSYVDADLGVNQEGGFQDIAIEVLH
LLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQARCPVVLAPLLYPEKRDILMDRILPD
SGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMARTHS
GLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYELD
HPGFMIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFCFA
DYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHCPD
MLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSM
AEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLT
DKIREHGVGGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETMATMLGCLQACA
GSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQMD
PLTAMGSLNLSSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSL
SSQLGNTGPLGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPTTFQQSKMKASDLSQVWPEA
NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF
EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA
ALDRFKNRLKDYPQYCQHLASIGHFLQFPLHLQECVQYIEYGQQSRDPPVKMQGSITTPG
SLALAQAQAQSQPPKAPQPGQPSTLVTTATATTTVAKTTTITRPTPGSFKKDVPPSINTT
NIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQY
LVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLK
NLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVSHQ
AEYLPELTGSQSFQAEYLQQQTGSQPELDDVDHYRQYYSPSPEEAKRLKIFRPQNPWTMA
IMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKSLEEQLSAPKK
EAKPPEEMIPIVSTGIQHFQTGMPLVGDFLPFAAAPSTPAPTTTCSATGPPTPQFSYHDI
NVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDRSIKIAMTTCEQ
IVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTP
QQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCD
PVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQ
AWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALARNSRDGIAALGL
LQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPLWCNKQITRCLIECRDEY
KYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHITE
ADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASE
YDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRL
CTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKIN
LLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN
TFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRN
VELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMR
LPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQ
VGGATLGPWKYLQHNDTSLEQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMS
TITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAI
QEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCC
MGQKQAQQVMEGTGAS
NT seq
7431 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
acaaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgtcacggc
cctgaggcggacaggcatttattacgctgtctcttctcccatgtggatttcagtggtgat
ggtaaaagcagtggcaaagattttcatcagtttctgatccaggagtgtgtttcactgatt
tcaaagcctaattttatttcaacactttgctacgccatcgacaatcctttgcactaccag
aagagtttgaagccgtcgtcccacttgtttactcagttgagtaaagttctcaagctaagc
aaggttcaagaagtgatatttggccttgctttgctcaattcgtgcaacgcagaccttcgt
ggttttgccgcgcagttcgtcaaacaaaagctccctgatctcctccgctcgtacgtggac
gcggaccttggcgttaaccaggaaggtggcttccaagatattgccatagaggtcctgcac
ctgctcctctcccatcttctgtttggccagaagggagccagtggcgtcggacaagagcag
attgacgctttcctcaagacactgtgcagagatttcccgcaggcgcgctgccctgtggtg
cttgcaccgctgctgtaccctgaaaaacgggacattctgatggacaggattctgccagac
tcgggagagttagccaagaccatgatggagagttctcttgcagagttcatgcaggaagtt
ggctatggcttttgtgcaagtcttgatgaatgccgcaacataattctgcagtatggggtg
cgagaggttactgccagccaggtggccagggtcctggggatgatggctcgtacccactct
ggcttgtctgatggaatccccctacagtccatctctgctccgggcagtggcatttggagt
gatggaaaggacaaaagtgatggttctcaggcccacacttggaatgtagaagttctgatt
gacgtggtcaaagaagttaaccccaatctcaacttcaaagaggtgacctacgagctcgat
caccctggctttatgatccgggacagtaagggacttcagatggtggtgtatgggatccag
aggggcctgggtatggaggtgttccctgtcgatctcatctaccggccctggaagcatgct
gagggacagctgtcattcattcagcactccctcatgagcccagatgtgttctgcttcgct
gactacccctgccacactgtagccatcgacatactgaaggcgccacccgaggacgataac
agggagatagccacctggaagagcctggacctggtggagagcctcctgcgcctctctgag
gtgggccagtacgagcaggtgaagcagctcttcagtttccccatcaaacactgtcctgac
atgttggtgctggcactgctgcagatcagcacctcttggcacaccctgcgccatgagctc
atctccaccctcatgcccatcttcctgggcaaccaccccaactccgccatcatcttgcac
tacgcgtggcacggacagggccagtccccctctatccgtcagctgatcatgcactcgatg
gcagagtggtacatgagaggagagcagtacgaccaggccaagctgtcccgcatcctggat
gtggcccaggacttgaagtctctttcaatgctgctaaatggtactccatttgcctttgtt
attgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatggctgact
gacaaaatccgagagcacggggtgggtggcgagcccttcatccaggcatgtgtaacgttc
ctgaaaagacgctgtccctctattatgggtggtcttgccccagagaaggaccagcccaaa
agcgcccagcttcccccggaaacgatggctaccatgctgggctgtctgcaggcctgtgca
gggagtgtgtctcaagagctctctgagactatcttgaccatggttgccaactgtagcaac
gtcatgaacaaagcccgccagccaccaccgggggtcatgccaaagggacgtgctcccagc
accagcagtctagacgccatttcccctgtgcaggtatcggtgtctcctctccagatggat
cccctgacagccatgggttcgctgaacctgagcagctctgccacctctcacacacagagc
atgcagggcttccctaccccgctgggctctgccttcagcaacccccagtccccagctaag
gccttccctccactgtccaaccccaaccccagcacaccatttggggggattgggagcctc
tcttcacagctaggtaacacaggtcctctgggatcaggcattggttctggtcttggaatg
ccagcggtgagcagcgatccgtttgggacgaggaagatgagcacaccgggcctgaatccg
accacctttcagcagagtaagatgaaggcctctgacctatctcaggtgtggcccgaggct
aaccagcactttagtaaggagattgacgatgaggctaacagttacttccagcgcatctac
aaccaccccccacaccccaccatgtctgttgatgaggtgctggagatgttacagaggttc
aaggactccaccatcaagcgagagcgggaggtctttaactgtatgctgaggaatttgttc
gaggagtaccgtttcttcccccagtaccccgacaaggagctgcacatcaccgcctgcctg
ttcggggggatcatcgagaagggtcttgtcacatacatggcccttggactggccctcaga
tatgtccttgaagccttaaggaagccatttggatccaaaatgtattactttggaatcgct
gctctagatagattcaaaaataggctgaaggactatccacaatattgtcagcacttggcc
tcgatcggccactttctgcaattcccccttcatttacaagagtgcgtgcagtatatcgag
tatggccaacagtcacgggatcctccagtgaagatgcaaggatccatcaccacccctgga
agcctggcgttggctcaagctcaggcccagtctcagcctcccaaagccccccagcctgga
cagcccagcaccctggtcaccacagctaccgccaccaccactgtcgccaaaaccactacc
atcacccgacctacccctggcagcttcaagaaggatgtgccgccctccatcaacaccaca
aacattgacactctgctggtagcaacagaccaaactgagaggattgtggaacccccagaa
aatgttcaagagaaaattgcttttatcttcaataacctgtcacaatccaacatgacacag
aaggttgaggagttaaaggaaactgtgaaagaggagtttatgccctgggtctcccagtat
cttgtcatgaagagggtcagcatcgagcccaacttccacagcctatactccaactttcta
gacaccctgaagaaccctgagtttgtcaaaatggttctgaatgaaacttacagaaacatc
aaggttctccttacctctgataaggcagctgcaaacttctctgatcgatccctactgaag
aatttgggccactggcttggcatgatcactctggctaaaaacaagcccatcctgtacacg
gatttggaggtgaaatccctgttgttagaagcctatgtcaaggggcagcaggagctactg
tatgtggtcccgtttgtagccaaagtcctggaatccagtttgcgtagcgtgtcccatcag
gcagagtacctaccggagctgacagggagccagtccttccaggcagaatacctacagcag
cagacaggcagccagccagaactagatgatgtagaccattataggcagtattatagccca
tctccagaagaagcaaagaggctcaaaatcttccgacctcagaatccctggaccatggcc
atcatgaatgttctggcagagttgcatacggaacatgatctgaagctgaacttaaagttt
gagattgaggtgctgtgtaagaacttatcactggacatcaacgacctgaagcctggcacc
ctgctgaaagacaaagacaagttgaagagtctggaggagcagctctctgcaccaaagaaa
gaggccaagccccctgaagaaatgatccctattgttagcacaggtatccagcactttcaa
actgggatgccccttgtcggagactttcttccatttgcagctgcaccatccactcccgcc
ccgaccaccacttgctcagctactgggccccctaccccgcagtttagctatcatgacatc
aatgtgtacgcccttgcagggctagcccctcacatcaatatcaacatcaacatccccttg
cttcaagcccaccctcagctcaagcagtgtgtgagacagtccattgagcgggctgtgcaa
gagctcgtccaccccgtagtggaccgctccatcaagatcgccatgaccacctgcgagcag
atcgtcaggaaggactttgctctggactcggaggagtcgcgcatgcgtgtggcagctcat
catatgatgcgcaacctgactgccggcatggccatgatcacctgccgggagcccctgctc
atgagcatcgccaccaacctgaagaacagctttgccgctgccctccgggcccccaccccc
cagcagagagagatgatggaggaggctgctgccagggtcgcccaggacaactgtgagctg
gcctgctgcttcatccagaagactgcagtggagaaggctggcccagagatggacaagagg
ctggcgacggagtttgagctgaggaagcacgcccgccaggagggccgtcgctactgtgac
cccgttgtgctgacctaccaggccgagcgcatgccagagcagatcagactcaaggttgga
ggcgtagaccccaaacagctggcggtgtatgaggagtttgcccggaatgttccaggcttc
ctaccaagcaacgacctgtctcagcccacaggattccttgcccagcccatgaagcaacag
gcatgggccacggacgacgtggctcagatctatgacaagtgcatggcagacctggagcag
cacctccacgccatccctccagcgctggccatgaaccctcagacccaggctttgcgcagc
ctgctggaggccgtggccctagccaggaactcccgggacggcatcgccgctctgggtctg
ctgcagaaggctgtggagggtctgctggatgctaccagtggtgccgatgctgacttgctt
ctgcggtacagagagtgccacctgctggtgctcaaagccctccaggacggccgggcatac
gggccactgtggtgcaacaagcagattaccaggtgcctgattgagtgccgtgatgagtac
aagtacaacgttgaggctgtggagctgctgatcagaaaccacctggtcaacatgcagcag
tatgacctgcacctggcacagtctatggagaatgggctgcactacatggcggtggcgttt
gccatgcagctggtgaagctgctgttggtggatgagcgcagtgtgagccacattaccgag
gcagacttgttccacactatcgagactctgatgcgaaccagcgcccactccagggccaac
gcacctgaggggcttcctcagctgatggacgtggtccgctccaactacgaggctatgatc
gaccgggcccacggaggacccaactttatgatgcactctggcatctcccaggcatccgag
tacgacgacccgccaggcctgagggagaaggctgagtacctgctgagggaatgggtcaac
ctgtaccactctgcagccgccggccgggacagcaccaaggccttctctgcctttgtgggc
cagatgcaccagcagggcattctgaagaccgatgacctgatcactcgtttcttccggctg
tgcacggagatgtgtgtagagatcagctaccgcgcccaggccgagcagcagcacaaccct
gcggccagcgccgccatcatcagggccaagtgttaccacaacctggacgcctttgtgcgc
ctcatcgccctgctggtcaagcactccggagaggccaccaacaccgtcaccaagatcaac
ctgctcaacaaggttctaggtattgtggttggagtgttgatccaggaccatgatgtgaga
cagactgagttccagcagttgccttaccatcgcatcttcatcatgctgttgcttgagctc
aatgcccccgagcatgtgctggagaccatcaacttccagaccctcaccgccttctgcaac
actttccacatcctgaggcctaccaaagcccctggctttgtttacgcttggctggagttg
atctctcaccgtatcttcatcgccaggatgctggcgcacaccccacagcagaagggttgg
cccatgtatgcccaacttctcattgatctgttcaagtacctggcacccttcctgaggaat
gttgagcttaacaaacctatgcaaatcctctacaagggtaccctgcgcgtccttctggtc
ctactgcatgacttcccagagttcctgtgcgactaccactacggcttctgcgacgtcatc
ccgcccaactgcatccagctccgcaacctgattctgagtgccttcccacgcaacatgagg
cttccagaccccttcactcccaatctgaaggttgacatgctcagcgagatcaacatcgct
ccgcgcatccttacaaacttcaccggagtgatgccctctcagttcaagaaggatctggac
tcgtacctgaagacacgctcccccgtcaccttcctctctgagctccgcagcaatctgcag
gtagggggcgccactctgggtccctggaagtatttgcagcacaacgacacatctttagaa
caggtgtcaaatgagccaggcaaccgttacaacatccagctgatcaacgctctggtgctg
tatgtgggaacccaggccatcgcacacatccacaacaagggcagcaccccctcgatgagc
accatcactcactcagcccacatggacatcttccagaacctggctgtggacctggacact
gaggggcgttatctcttcctgaatgccatcgccaatcagctgcgctacccaaacagccac
acccattacttcagctgcaccatgctgtacctgtttgctgaggccaacactgaggcaatc
caggagcagattaccagggttcttctggagaggctgattgtgaacaggcctcatccctgg
ggactgctcatcaccttcatcgagctcatcaagaatcccgccttcaagttctggagccac
gactttgtacactgtgccccagagattgagaagttgttccagtcagtggctcagtgctgt
atggggcaaaagcaggctcagcaggtgatggagggcactggtgccagttag
DBGET
integrated database retrieval system
