Salmo salar (Atlantic salmon): 106577119
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Entry
106577119 CDS
T04363
Symbol
pnpt1
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106577119 (pnpt1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106577119 (pnpt1)
03016 Transfer RNA biogenesis [BR:
sasa03016
]
106577119 (pnpt1)
Enzymes [BR:
sasa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
106577119 (pnpt1)
Messenger RNA biogenesis [BR:
sasa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
106577119 (pnpt1)
Transfer RNA biogenesis [BR:
sasa03016
]
Prokaryotic type
tRNA degradation factors
106577119 (pnpt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KRR1-like_KH2
Motif
Other DBs
NCBI-GeneID:
106577119
NCBI-ProteinID:
XP_014010340
UniProt:
A0A1S3N4U0
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Position
ssa18:complement(24255604..24269730)
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AA seq
770 aa
AA seq
DB search
MKHLLRLGPTLARLNVRLCHQSVWNSHGTIQKVGVNLGEKKLEISTGKLARFADGSVVVQ
LGDTTVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNHLRRELGTTENEILTSRLI
DRAIRPLFPAGYFYDTQILCNLLAVDGVNDPDVLAINGASAALTLSDIPWNGPIGAVRIG
LVDGEFLVNPTRKQMASSTINLIVAGAPLSQVVMIEASAENVLQQDFCHAVKVGVKHTQQ
IILAIQQMAREAKVTKRTPPKIFSAPEEMIEHTRQLASEKVYAVFTDFTHDKISRDDAIN
KVRLETEEQIKEKYPHAEPYEVMESFNMVFKEVFRNLVLNEYRRCDGRNLTSLRNISCEA
DIFKPLHGSALFQRGQTQVLCSVTFDSLESSIKTDIITTALSGVKDKNFMLHYEFPPYAT
NEIGKMSGMNRRELGHGALAEKSLRPVIPKDFPFTIRVTSEVLESNGSSSMASACGGSLA
LMDAGVPITSAVAGVAIGLISKANPEKPSVIQDYRILTDILGIEDYLGDMDFKLAGTNKG
INALQADVKIPGLPLKLVMEAIQQATVAKREILGIMNNTIAKPRANRKENGPVVENVRVP
VSRRARFVGPGGYNLRRLQAQTGVTISQVDEETFSVFAPTPGAMNEAQEFITEICKDDQE
QQLEFGAVYTATIMEIRDIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSAIGLEVGQQIQV
KYFGRDPTDGRMRLSRKVLQSPAATGVKTLSEKQSITMGTGNGQATSNSS
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgaaacatttactgaggcttgggcccacgctggccagactaaatgtgcggttgtgccac
caaagtgtctggaacagccatggaacgatacaaaaagtgggtgtgaacttgggtgagaaa
aaacttgagatctcaacagggaaacttgccagatttgcagatgggtcggttgttgtgcag
cttggggatacaacagtgatggtgacagctgtcagcaaaacgaaaccgtccccctcccaa
tttatgccactagtggtggactacagacagaaagcagctgctgctggtagaatccccact
aaccacttgcggcgggagttgggcaccactgaaaatgagattctgactagtaggctaata
gacagggcaatcagacccctttttcctgctggttatttctatgacactcagatcctgtgt
aacctgttggcagttgatggtgttaatgatccagatgtactggctatcaatggagcctct
gctgcccttaccctttctgacattccctggaatgggcccattggtgcagtgcgcattggc
ctggtggatggcgagttcctggtgaacccaacacgaaagcaaatggcttccagcactatc
aatctgatagtggctggagcacctctcagccaagtggtgatgatcgaggcatctgctgag
aatgtgttgcagcaggacttctgtcatgcagtcaaggttggcgtgaagcacacacagcag
atcatattggctattcagcagatggccagagaagcgaaagtgaccaagcgcacccctccc
aaaatattttctgcgcccgaggaaatgattgagcacacacgacaattggcctctgaaaag
gtctatgctgttttcacggacttcactcatgacaagatttccagagatgacgccattaac
aaagtgcgactagaaaccgaggaacaaataaaagagaaatatcctcatgcagaaccttat
gaggtgatggaatccttcaacatggtgttcaaagaggtcttccgtaatctggttttgaat
gaatataggaggtgtgatggaagaaacctgacttcattaagaaatatttcctgtgaggca
gacatctttaagccccttcatgggtctgcacttttccagaggggacagacacaggttctg
tgctctgtaacatttgactccttggagtccagtattaaaacagacatcattactacagca
ttaagtggagtcaaagacaagaatttcatgcttcactatgagtttcctccttacgcaacc
aatgagattggaaagatgagtggaatgaacagaagagagcttggtcatggggcactggcg
gagaagtctttgagacctgtcatcccaaaagacttccctttcactattagagtcacctct
gaggttttggagtctaatggttcctcgtcgatggcgtcagcatgtggaggcagtctggct
ttgatggatgctggtgtgcctattacatcagctgtggcaggtgtagctattggactcatc
tccaaggcaaacccagagaagccatcggtaatccaggactaccgaatactgactgatatt
ctgggaatcgaggattacctaggagacatggacttcaaactggctggaacaaataagggt
atcaatgccttacaggctgatgtgaagattccagggttacctctgaaacttgtaatggag
gctattcaacaagccacagttgccaagagggagattttgggcatcatgaacaataccatt
gccaagcccagggctaacagaaaggagaatggtccggttgtcgaaaatgtcagagtccca
gtctccagacgagcacgctttgttgggccagggggctataacctccgcagactacaagct
caaacaggtgtgacgataagccaggtggatgaggagaccttctctgtgtttgcacctact
cctggtgccatgaatgaagcccaggagttcatcacagaaatctgcaaagatgaccaagag
cagcagctggagtttggtgctgtttacactgccaccatcatggaaataagggacattggt
gtcatggtgaagctgtatcccaatatgagtgctgttctgctccataactctcagctggac
cacaaacggataaaacacccaagtgctattggattagaggttggacaacagattcaggtt
aaatactttgggcgagacccaacagatggaagaatgaggctttcaaggaaggtgttacaa
tctccagcagcaacaggtgttaagacactgagtgagaaacagagcatcaccatgggcaca
gggaatggccaagcaaccagcaactcgtcttga
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