Salmo salar (Atlantic salmon): 106581666
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Entry
106581666 CDS
T04363
Name
(RefSeq) collagen alpha-3(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106581666
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106581666
09142 Cell motility
04820 Cytoskeleton in muscle cells
106581666
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106581666
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106581666
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106581666
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106581666
Hyaluronan
Extracellular matrix or blood plasma proteins
106581666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
fn3
DUF5446
Motif
Other DBs
NCBI-GeneID:
106581666
NCBI-ProteinID:
XP_014019342
UniProt:
A0A1S3NVA4
LinkDB
All DBs
Position
ssa21:6131040..6228916
Genome browser
AA seq
3136 aa
AA seq
DB search
MRDFVQRVVETLSVDENKDRVAVVQYSRDPAAQFYLNTYTTKGEILNTVRGLRHKGGRPL
NTGAALQYVRDNVFTASSGSRRLEGVPQLLILLSGGRSVDNVDTPASALKELGVLVFGIG
TRSSDSRELQRISHDPSYALSVSDFTDLPSIQQQLLSSVEAVVIDVTPESPTVLVDHDTA
RKDVVFLLDGSDGTRNGFPAMRDFVQRVVEKLNVGGDKDRVSVVQYGRDQEVNFYLNTYT
TKGDILDIVRGLRHRGGRPLNTGAALHYVRDNVFTASSGSRSQEGVPQMLILLSGGRSND
NVEIPVSALKEIGVLIFGIGNRNSSKEVQRIASDPSYSQSVSEFSDLPSVQDKFFSSLIT
VHVGATPISPTVIVDLSIARKDVVFLLDGSDGTRNGFPEMRDFVQRVVEKLTVGENRDRV
SVVQYSREPEAHFYLNTYMRKEEVVDTVRGLKHKGGRPLNTGAALQYVRDYVFTASSGSR
RLESVPQILILLNGGRSFDNVDKPASALKELGVLVFGIGTRSSDSRELQKISYDPSYALS
VSEFTDLPNIQQQLLSAMNTAIIQDTTMTPTLIPTILVESQAPRRDVVFLLDGSDGTRSG
FPAMRDFVQRVVETLSVDENKHRVAVVQYSRDPAAQFYLNTYTTKGEILNTVRGLRHKGG
RPLNTGAALQYVRDNVFTASSGSRRLEGVPQLLILLSGGRSVDNVDTPASALKELGVLVF
GIGTRSSDSRELQRISHDPSYVLSVSDFTDLPSIQQQLLSSVEAVVIDVTPESPTVLVDH
DTARKDVVFLLDGSDGTRNGFSAMRVFVLKVVENLNVGGNKDRISVVQYSRNQEVHFYLN
TYTKKEDILDSIRRLRHKGGRPLNTGAALQFVKDNIFRDTSGSRRYEGVPQILILLSGGQ
SNDAVSQAAFDMKGQGIQSVGIAIRHADTREMQSITSDPQLILVAQDFSDLSALHLELLS
SIAQFSSPGLIAESQGPKKDIVFLVDGSDGVGREFPIIQEFIRSIVKNLNVGENKIRIGV
VQYGDSPNADIYLNSHTTKEGVMNAVKGLRQRGGRERNLGQAVEFVSSEVLNVRRGGRKE
EGVPQFLIVVSGGRSTDDISRPATSLKQSGVLPFSIGTRDVNPQELQVVSYVPNFAYSVD
DLPGLYTVQDTLISKLTELSDDDIARLRPVFPTVDVTTTIVSTGGEKRDVVFLIDGTTAV
RSEFPAIRDMIGRVVEKLDVGLDRVRVSVVQYSDDANMEFLLNEHSTKDEVRQATRKIQS
RGGNRLNTGRALDWVSKNIYQRSAGSRIEEGVPQFLILVTGGKSNDDVSGPANQLKTNLV
APLAIGAKNANLNELRQISLKPEFAYSINNFGQLATVERQLIASVNTMTTPVPPANLNMG
RKDIIFLIDGSDTTGSNGIAHIRDFILNIVQQLDVQPDQVRVAVVQYSDKVKTDFSLNSH
NNKPAVLSAIKRLRQQGGRSSDLAKAIEYVIRNELKSSAGVRLAEASQHLVVLTGGRSPT
DVSVYGPLLKGSRVNCIGIGAGGADSRQLNQIATSSADVLQVPTFPGLPTIKERFIARLN
GTIPEETPTEIVDPTSGLPKAKAADIVFLVDGSINLGKDNFKEVMEFILNLIDLFFTERD
NLQIGLAHYATDVTDVFYLNTYKTKDDIISALSRTEYKGGRRINTGAAIRHVQENHFIKD
KGSRKDEGIPQILMIVTGGRSSDDGKTAALGLKATGVRIYAVGVGDIEDELNNLASEAST
VARASTFMELSELNEQILETLDDEVKGIKLCTGVSQEPSKACSLEVLVGFDVSSQNIFQA
QRILESKMGAILQRITKMTGISCSSGQIPSIQVGILAMDTASEPVHLEFTDNADMLFESF
RALRNRGPYVLNAKTIAAYGSRFKSRAADAVKVVIHLTDGLDGQYNEMKRRVEELKISGV
NSFILVGLEQVPRFEEAVLLEFGRGFRYTRPLRVNVMDLDYELLEELDNIAERECCAVPC
KCTGTRGDRGAVGLGGPKGSPGGAGGAGHPGDEGGPGDRGPPGVNGTQGFQGCPGQRGIK
GGRGYSGEKGEYGEIGLDGINGEEGKSGVAGPPGDRGNPGRRGPKGTKGHAGDIGDTGIR
GDPGTTGQDNNVAGPKGDPGDVGPVGEPGEDGKKGGPGEPGRTGSDGRRGPPGQAGNPGK
PGGDGVQGEPGIGGSRGQAGPIGAPGTRGEDGNPGPRGPGGAQGPPGDKGRRGALGRKGE
PGEPGPKGIVGPLGPRGEPGEDGRDGFGIAGPKGRKGDEGFPGFPGPKGAAGDGGNNGGP
GPIGNRGQRGVSGEIGTPGQKGEVGYPGPYGQKGPRGPGVVQCDLVKKIRDNCPCCYGQQ
ECPLYPTELAFALDASDGVGRPAFNNMRDAVLRLVGNITISESNCPRGARVALTLYNNEV
TTEIRFADALKRRSLVQRVEGLQALQTRKQRSLETAMNFLAQNTFKRVRSGFLMRKVAIF
FVNGPVKDQRAVSAAALRLYDSGIASVFLVNKEDGQLTRALKMNNTGSALGQVIVLPNPG
SAQYNSAIQKVMSCHICLDSCAPDQMCDYVPPQQSRDRRSSTTDVDIDMAFVMDSSETTY
PTVFTEIKRYVAHIVEQLEVSSDPMASIHHARVAVIQQAPYEFLRNSSGSPIRVDVGLTD
HLSAQDIHNFLLDKTPQLEGGRALAAAIEHTVEQVFERAPHQRDLKVLTLFVTGPVEEDE
ERLVAVATEAKCKGYFLVILGVGEKLSAGDARVMMRMASEPSDVFFKRLTSTSHFYDKHI
QNFGRLLPKYLSIENAFYMSPEVSKNCHWYQSDQPFPKFPFPKSHHSQEKHQKHHENHQA
VHPRKHKDQEELHVANATSSGLTLRWASPDPKLIAYFEVVVTRLRDHTLVLRRNVTGTEI
TVGGLESAQTYHAVVTTHTAQGHVAATHKGIITTKAAAEHKVAAPMEVTGIIATTPLDKP
EIANELTDPCSLDFDPGLACKNHQAKWFFDRKNGICTQFWYGGCEGNGNRFETEAQCLKR
CMRSEPQQQVEQQLETEILPAPAVLTRVEICQLPKEEGACAKFVLKWHYDALSKSCTRFW
YGGCGGNQNRFETQEECEKACGKAALPRGQKAWDWLDESRANPERHSQRRVRMKGKRRKG
SLGAPVNQGVIAAIRT
NT seq
9411 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgactttgttcaaagagtggtggagacactcagtgtggatgagaacaaagatcgc
gttgcggtggtccagtacagtagagatccagccgcccaattctatctgaacacatacaca
acaaagggagagattctcaacactgtaagaggtctgagacacaaaggcgggagacctctc
aacactggagcagctctccagtacgtgagggacaatgtctttactgcctcctccggaagc
agacgcttggaaggcgttccacagctactgattctgttgagtggtggaaggtcggttgac
aatgttgacacgccagcctctgctctgaaggagcttggggttttggtctttggaattgga
acaaggagctctgatagcagagaattgcagaggatatcacatgatcccagttacgctctg
tctgtctcagactttactgaccttccaagcatccagcagcaacttctgtcctcggtggag
gcagtggttattgatgttactccagaatcaccaacagttttagttgatcatgacaccgcc
agaaaggatgtggtattccttctggatggttctgatggcacaaggaatggattcccagca
atgcgtgattttgttcagagagtagtagagaaactcaatgtgggaggagacaaagaccgc
gtttctgtggtccagtacggtagagatcaagaagttaatttctatctgaacacatacacc
acgaagggcgacattcttgacatcgtcagaggtctgaggcacagaggaggtagacccctc
aacactggggcagccctccattatgtaagggacaacgtctttactgcctcctcaggaagc
agaagccaagagggtgtccctcagatgctgatactgctgagtggcgggaggtccaatgat
aatgttgaaataccagtttctgccctgaaagagattggggtcttgatctttggcattgga
aacagaaattctagcaaagaggttcaaaggattgcctctgaccccagttattcccagtct
gtttctgaattctctgatctccccagcgtccaggataagtttttctcctcactcattact
gtacacgttggcgccacacccatttccccaacagtcatagtggacctaagcattgccaga
aaggatgtagtattcttgctggatggttctgatggcactaggaatggcttcccagaaatg
cgggactttgttcaaagagtagtggagaaactcactgtaggggagaacagagatcgagtc
tctgtggtacagtatagcagagaaccagaggcccacttctatctgaacacttacatgaga
aaagaagaggttgttgacaccgtaagagggctgaagcacaaaggagggagacccctcaac
actggagcagctctccagtatgtcagggactacgtctttactgcgtcctctggaagtagg
cgccttgaaagtgttccacagattctgatactgctaaatggtggaaggtcctttgacaat
gtagataaaccagcttctgctctcaaggagcttggtgtcttggtgtttggaattggaaca
aggagctctgatagcagagaattacagaagatatcctatgaccccagttatgctctctcc
gtgtctgaatttactgacctccccaacatccaacagcagcttctttctgccatgaacact
gccattatacaggacacaaccatgacaccaacactaataccaacaatactagttgagagt
caggctcccaggagggatgttgtgttcttgctggatggatctgatggcactaggagtgga
ttcccagccatgcgtgactttgttcaaagagtggtggagacactcagtgtggatgagaac
aaacatcgcgttgcggtggtccagtacagtagagatccagccgcccaattctatctgaac
acatacacaacaaagggagagattctcaacactgtaagaggtctgagacacaaaggcggg
agacctctcaacactggagcagctctccagtacgtgagggacaatgtctttactgcctcc
tccggaagcagacgcttggaaggcgttccacagctactgattctgttgagtggtggaagg
tcggttgacaatgttgacacgccagcctctgctctgaaggagcttggggttttggtcttt
ggaattggaacaaggagctctgatagcagagaattgcagaggatatcacatgatcccagt
tacgttctgtctgtctcagactttactgaccttccgagcatccagcagcaacttctgtcc
tcggtggaggcagtggttattgatgttactccagaatcaccaacagttttagttgatcat
gacaccgccagaaaggatgtggtattccttctggatggttctgatggcacaaggaatgga
ttctcagcaatgcgtgtttttgtactgaaagtagtggagaatctcaatgtgggaggaaac
aaagaccgcatttccgtggttcagtatagtagaaatcaagaggtacatttctatctgaac
acatacaccaaaaaggaggacattcttgacagcataagacggctgaggcacaaaggtggt
agacccctcaacacaggggcagcactccagttcgttaaagacaacatctttagagacacc
tctggaagcagacgttatgaaggtgtccctcagatattgattttgctgagtggtggacag
tcaaatgacgctgttagccaagctgcctttgatatgaaaggtcaaggaattcagagtgtt
ggcattgccatcagacatgccgacactagagaaatgcagtcaattacgtccgatccacag
ctcatccttgtggcacaagacttttcagacctgtcagcactgcatctggagcttttatca
tcaattgctcaattttccagtcctggtttgatagctgagtctcagggtcccaagaaggat
atcgtcttccttgttgatggctcagatggcgtcggaagggagttccccatcatccaggag
ttcatccgctcaatcgtgaagaacctcaacgtgggcgagaacaagatcaggattggtgtg
gtgcagtatggcgactcccccaatgcagatatctacctgaactcccacacaaccaaggag
ggggttatgaatgctgtcaagggactgaggcagagaggcggccgggaacgtaacctgggt
caggcagtggagtttgtcagtagtgaagtgctgaatgttcgacgtggcggcaggaaggag
gagggtgtcccacagttcctgattgtcgtctccggcggaaggtccacagatgatatcagt
cgacctgcgacatcactgaagcagtcaggcgttttgcccttcagcatcgggaccagagat
gtaaaccctcaggagcttcaggttgtttcctatgttcccaactttgcgtacagtgtggat
gacctccctggcctgtacacagtccaggacacactgatctccaagctcacagagttgtcc
gatgacgacattgccaggctacgccctgttttcccaactgtggatgtcaccacaaccata
gtatccactggcggagaaaagagggatgtggttttcctcattgatggcacaacagctgtg
cgcagcgagttccccgccatccgtgacatgatcgggagggttgtggaaaagttggacgtg
ggtctggatcgggtcagggtgtcagtggtgcagtacagtgacgatgccaatatggagttc
ctcctgaacgagcactccaccaaagacgaggtccgccaggccacgaggaagattcagagc
aggggtggaaaccgtctaaacactggccgtgccctcgattgggtctccaagaacatctat
cagagatcagccggtagccgcatcgaggagggtgtgcctcagttcctcattctagtcacg
gggggaaagtccaacgacgacgtctctggaccagccaaccagctgaagaccaacctggtt
gcccctcttgccatcggggcaaagaatgccaacctcaatgaactgaggcagatctccctg
aagccagagttcgcctactccattaacaactttgggcagcttgcaacagtggagcggcag
cttattgcttcagtcaacaccatgaccacccctgttcctcctgctaacctcaacatgggg
aggaaggacatcatcttcctcatagatggctcggacaccacagggtccaatggcatcgcc
cacatccgtgacttcatcctcaacatcgttcagcagctggatgtgcaacctgaccaggtt
cgggtcgctgtcgtccaatactctgacaaggtcaagacggatttctctctcaattcccac
aacaataagccagctgtgctctctgccattaaaagactacgccagcagggtggcagatcg
tccgatctggccaaagccatcgagtatgtgatcaggaacgagctgaaatcctcggcaggt
gtccggcttgcggaggcctcccagcatctggtggtcctcaccggcggaaggtcccccact
gacgtgtctgtgtatggccctctgctcaaaggctcccgggttaactgcattggcattggg
gctggtggagcagactccaggcagctcaaccagattgccaccagctctgccgatgttctt
caggtacctactttccccggcttgcctaccattaaggagaggttcattgccaggctcaat
gggacaatccccgaggagacccctacagaaattgttgacccaacttcaggactccctaaa
gccaaggctgctgacatcgtgttcttggtggatggctccatcaaccttggcaaggacaac
ttcaaggaagtgatggagtttatcctgaaccttatagacctcttcttcaccgagcgtgac
aacctgcagattggccttgcccactatgccaccgacgtcactgacgtcttctacctcaac
acctacaagaccaaggacgacatcatcagcgccctcagtcgcacggagtacaagggtggc
cgcaggatcaacacgggtgctgccattcgccacgtgcaggagaaccacttcatcaaagat
aaaggcagcaggaaggatgagggcatcccccagatcctgatgattgtcactggcggaagg
tcatccgacgatggcaagactgccgctctggggttgaaggccaccggtgtgcgcatctac
gccgttggcgtgggcgacattgaggatgagttgaacaacctggcgagcgaggcctccacg
gtggccagggcgagcacgttcatggagctctctgagctcaacgagcagatcctggaaaca
ttggacgacgaggtgaagggaatcaagctgtgcactggcgtgagccaggaaccctcaaaa
gcttgcagtctggaggtgttggtgggctttgacgtgtcctcacagaacatcttccaggcc
cagaggatcctggagtccaagatgggtgccatcctccagaggatcaccaagatgacgggc
atcagttgctcgtcgggacagatcccctcgatccaggtgggcattctggccatggatacc
gcctcggaacctgtccacctggagttcacggacaacgccgacatgctgtttgagtcattc
cgggccctgcgcaatcgcggcccctatgtcctcaatgccaagaccattgccgcatacggt
tcgaggttcaaaagccgagccgcggacgcagtcaaggttgtgatccatctgactgatggt
ctggatggccagtataacgaaatgaagagacgggtcgaagaacttaaaatttcaggtgtg
aacagcttcatcctggtgggtctggagcaggtacccaggtttgaggaggctgtgctgctg
gagtttggccgaggcttcaggtacaccagacccctccgagtcaatgtcatggatctggac
tacgagcttctggaggaactggacaacattgctgagagggagtgctgtgcagtgccatgt
aaatgcactggcacaaggggagaccgaggagcagtcgggcttggaggacccaagggcagt
ccaggtggagcaggcggagcaggacatcccggagatgagggaggacccggagacagaggt
cctcctggtgtcaatggaacgcaaggtttccagggctgtcctggacagaggggcatcaag
ggtggtcgtggatactctggagaaaagggggaatatggagagatcggcctggatggcata
aatggagaagagggcaagagcggagtcgctggacccccaggagacagagggaaccctggg
agaaggggacccaaaggaactaaaggacatgcaggagacatcggggatacaggaatcaga
ggcgatcctggaaccacaggtcaagataacaatgtggctggacctaaaggagacccaggc
gatgtcggcccagtgggagagccaggggaggatggtaagaagggaggccccggtgaacca
ggcaggacgggttctgatggtagaagaggcccacctggtcaagctggaaaccctggcaaa
cccggaggtgatggtgtgcagggagagcctggtatcggaggatccagaggccaagctgga
ccaatcggtgcacctggaactagaggtgaggatgggaaccctggaccaaggggtccagga
ggagcccagggaccccccggagacaagggcaggagaggagctctgggtcgcaagggtgaa
ccaggagagcccggaccaaaaggcatcgtgggacctctgggacctcgtggtgagcctggc
gaagatggtcgagatggatttggtatcgcagggcccaaaggaagaaagggtgatgagggc
ttcccaggattcccaggaccaaagggagcggcaggtgatggaggaaacaatggcggacca
ggacccataggaaaccgtggccagaggggtgtttcaggtgaaatcggtactccgggtcaa
aagggagaggttggataccccgggccttatggccagaaaggaccgagaggacctggcgtt
gtgcaatgtgaccttgtgaagaaaatcagagacaactgtccttgctgctatggtcaacag
gagtgccctctctaccccactgagctagcctttgccctggacgcctcagacggcgtgggt
cggcccgccttcaacaacatgcgtgacgccgttctccgcctggtcggcaacatcaccatc
tccgagagcaattgcccacgcggtgcccgcgtggccctcaccctctacaacaacgaggtg
accaccgagatccgctttgccgatgcgctgaagcgccgctccctggtgcagcgcgtggaa
ggcttgcaggcattacagacgcgcaaacagcgcagcctggagacggccatgaacttcctg
gcgcagaacaccttcaagagggtgcgcagcggcttcctcatgaggaaggtggccatattc
tttgtcaacgggccagtgaaggatcagcgggcggtcagcgccgcggccctccgtctctat
gactccggcatcgcctcggtgttcctggtcaacaaagaggatggccagcttaccagagcc
ctgaagatgaacaacactgggtcagcactgggtcaggtgatcgtactgcctaatcccgga
agtgcacagtacaactcggctatccaaaaggtcatgagctgccacatctgcctggactcc
tgcgctccagaccaaatgtgtgactacgtcccccctcagcagtcgagagacaggaggtcc
tccaccaccgacgtagacattgacatggccttcgtcatggacagctccgagaccacctac
cccactgtcttcaccgagattaaacgctacgttgcgcacattgtggagcagcttgaagtc
tcgtcagaccctatggcatccatccaccatgcccgtgtggctgtgatccagcaggcaccc
tacgagttcctgcgcaacagtagcggctcgccaatccgcgtggacgtgggcctgaccgac
cacctctcggcccaagacatccataacttcctcctggacaaaacgccccaactggagggt
gggcgggcgctggcggcagccatcgagcacacggtggagcaggtgtttgaaagggcgccc
caccagcgtgacctcaaggtgctgacattgttcgtgacaggcccagtggaggaggatgag
gagcggctggttgccgtggccaccgaggccaagtgcaagggctatttcttggtcatcctg
ggcgttggcgagaagctgagtgctggggatgcccgcgtgatgatgcgcatggccagtgag
ccctccgacgtcttcttcaagaggctgaccagcacctcgcacttttacgacaagcacatt
cagaactttggccgactgctgcccaagtatctcagcattgagaacgctttttacatgtcc
cctgaagtctccaaaaactgtcattggtaccagagtgaccagccattccccaagttcccc
ttccccaaatcacaccacagccaagagaaacatcaaaaacaccacgaaaatcaccaggca
gtccatccaagaaagcacaaagaccaagaggagttgcacgtagccaatgccacttccagt
ggcctgaccctgcgttgggccagcccggaccccaagctcatagcctacttcgaggtggtg
gtgacgcgcctgcgcgaccacacactggtgctgaggaggaatgtgacaggcacggagatc
actgtaggcggcctggaaagcgcccagacctaccacgccgtggtgaccacacacaccgcc
cagggccacgttgcggccacacacaaaggcattattactaccaaagcagcagcagagcat
aaggtcgctgcccccatggaggtgactggtatcatagccactacaccactggacaaacca
gagattgctaacgagctcacagacccatgctctcttgactttgaccctggattggcgtgc
aaaaaccatcaggctaagtggttctttgacagaaagaatgggatctgtacccagttctgg
tacggtggttgtgaaggcaatggcaataggttcgagactgaagcccagtgcttgaaacgc
tgcatgaggtcagaacctcagcaacaagtggagcagcagctcgagactgagatccttccc
gctcccgcggtcttgacaagagtggaaatctgtcagctccccaaagaggaaggcgcctgc
gcaaagtttgttctcaagtggcactacgatgcactcagcaagagctgcacacgcttctgg
tacggaggctgtggcggcaaccagaatcgcttcgaaactcaagaggagtgtgagaaggcc
tgtggaaaagcagctctgcctcgagggcaaaaggcatgggattggttggatgaaagccgt
gcaaaccccgagcggcactcacagcgacgagtgagaatgaaaggaaagagaagaaaaggc
tcgctaggtgcacctgtcaaccaaggagtcattgccgcaataagaacatag
DBGET
integrated database retrieval system
