Salmo salar (Atlantic salmon): 106605362
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Entry
106605362 CDS
T04363
Name
(RefSeq) collagen alpha-2(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106605362
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106605362
09142 Cell motility
04820 Cytoskeleton in muscle cells
106605362
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sasa00535
]
106605362
Proteoglycans [BR:
sasa00535
]
Extracellular matrix (ECM) proteoglycans
Others
106605362
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106605362
NCBI-ProteinID:
XP_014056362
UniProt:
A0A1S3RWU4
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Position
ssa05:58154465..58165644
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AA seq
657 aa
AA seq
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MGAPRVKASVISQLLVLLLCILPSHAQDEYSGYHSGDEHTYEGSLVDNYEHSGYPQPEEY
PPEPTHSYEEQQPSSGYDPYAPAPTSVSMITEDSYPYTTTTQVPYEQEPYEESLQVPGGG
EASLGEEGPTDCNCEPGEPGFAGFAGPKGARGLQGRDGFPGAQGREGYKGFKGVLGRGGD
TGPEGDSGPDGEDGASGFSGAQGLPGLPGDPGETGVLGLKGDIGMEGPRGGVGVTGETGP
IGEAGPGGPDGTGGIKGSTGAEGKQGPEGTEGEKGQIGAPGFSGDHGEMGYNGYPGEPGG
RGETGHKGDQGPGGMPGSDGEPGEDGPLGVPGVIGFPGEFGQKGARGDRGVRGPPGRVGA
GGHQGARGDAGVPGKPGPKGLQAQPGAKGETGPDGEKGGVGRTGVKGKKEDKGSFGERGD
KGQQGERGTIGPDGIVGRNGPPGIPGSRGEPGPGGDLGVKGGSGPKGVPGAPGPGLTDEQ
VLQLCKGVVIAQISQYAASIRAKCSQGCPINNRTLIGPPGTRGPTGESGKPGKAGKAGVK
GGRGIQGDTGVDGQKGAEGERGTKGLKGKGGEPGKGLPGHDGHQGLRGLPGHPAEPKNGM
AGPRGPRGFTGALGQPGMAGNAGVPGFCEARDCSIHAPVMRKEQGLVKGPRDLSPKI
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgggagcccccagggtgaaggcgtccgttatctcgcagctgctcgtgctcctattgtgt
atcctcccctcccacgcgcaggacgagtactctggttaccactcaggtgatgaacacacc
tatgagggctccttggtcgacaactatgaacattcaggatacccacaaccagaggaatac
ccaccggagcccactcacagctatgaggagcagcaaccctcatctggatatgacccctat
gcaccagcccccaccagtgtgagcatgatcacagaggactcctacccctacaccaccacc
acacaggtaccatacgagcaggagccctacgaagagtcgctccaggtccctggtggtggg
gaggcttctctgggggaggaggggccaacagactgtaactgtgagcctggagagccaggg
ttcgctgggtttgcagggcccaagggagccagaggactgcaaggtagagatggcttccct
ggggctcagggaagggaggggtacaaaggattcaaaggagttctaggaagaggaggagac
acagggcctgagggtgactctgggcctgatggggaggacggtgcctctggtttctctgga
gcccagggcttgcctggtcttcctggagatccaggtgagacaggggtgctaggactgaag
ggtgacatcggtatggaggggccacgcggaggagtgggggtaacgggtgagactggtcca
attggtgaggcagggcctggtggtcctgatggaactggaggtatcaagggatcaactgga
gcagaagggaaacagggtcctgagggaacagaaggggaaaagggtcagattggagcacct
ggattctcaggagaccatggggagatgggctacaatgggtatcctggagagccaggaggc
agaggagagaccggtcacaagggtgaccaaggcccagggggcatgccaggcagtgatggg
gagcctggagaggatggtcctcttggagttcctggggtgatcggctttcctggagagttt
ggacaaaagggcgcgagaggggatcgtggtgtgaggggacctcctgggagagtaggagct
ggggggcatcaaggagcgagaggagatgcaggagttccagggaaaccaggacctaaaggc
ctgcaggcccagcctggagccaaaggggagacaggacctgatggtgagaagggtggtgtt
ggaagaactggtgtgaagggaaagaaagaggacaagggaagctttggagagcgtggtgac
aaaggacagcaaggagagagaggtaccatcggccctgatggcattgttggacgaaatgga
ccccccggcatcccaggctccagaggagagccaggtccaggcggtgacctgggagtcaaa
ggtggctctggacctaaaggagtgccaggtgcccctggccctgggctgacagatgagcag
gtattgcagctgtgtaaaggagtggtgatagcccagatctcccagtatgcagcttccatc
cgggccaagtgttcccaaggctgccccatcaacaaccgcacacttattgggccacccgga
accaggggaccaactggagaatcaggcaaacccggtaaagcgggcaaagctggagtcaaa
ggaggcaggggcatccaaggggacacaggagtggatggtcagaagggggcagagggtgaa
agaggaacaaaaggtctgaaaggaaaggggggtgagcctggtaaaggtctaccaggacac
gatgggcatcaaggtctcagagggctgccaggccacccagcagagccaaagaacggtatg
gcaggtcccagagggccccgtggtttcacaggcgctttgggccagcctggcatggcaggc
aacgcaggagtgcccggcttctgtgaggcacgggactgcagcattcacgcgcctgtgatg
cgcaaggagcagggcctagtgaagggaccccgcgatctaagccccaagatttaa
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