Syntrophus aciditrophicus: SYN_01348
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Entry
SYN_01348 CDS
T00346
Name
(GenBank) nuclease subunit of the excinuclease complex
KO
K03703
excinuclease ABC subunit C
Organism
sat
Syntrophus aciditrophicus
Pathway
sat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SYN_01348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sat03400
]
SYN_01348
DNA repair and recombination proteins [BR:
sat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SYN_01348
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
HHH_2
UVR
HHH_5
HHH
HHH_8
UPF0758_N
Cast
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ABC76584
UniProt:
Q2LR71
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Position
708313..710169
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AA seq
618 aa
AA seq
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MNRQQLEGRIDIAPRTPGVYLMKDAAGKILYVGKAKNLKSRTRAYFSGTDSRAMIPFLVS
RIHDIEFILTETEKEALILENNLIKEHHPRYNICFRDDKAYFNIRADLNEPFPRFQLVRR
PRKDGAKYFGPYPSSASARETLQFLQSIFPLRTCRDAELKSRTRPCLEYQIKRCLAPCVG
RINSEDYLQMVRDGVSFLEGRGNNLLRELRERMKMAAEQMNYEEAAFLRDRIRAIEETLE
RQRMVSMTFKDQDIFGLYREGHLIQVCILLIRQGKILGSRLLPLLKFEGETADMLSSLLM
QYYDQSVDIPQEILIPASIEDRQVIREWLEEKRGKGLSILIPRKGRGLELLHIAEQNAEH
GFKMERKSLDDSDESLRLLMERLHLRRFPRKIEAFDISNIGGRLAVAAMVTFQDGRPLKS
GYRRFRIRTVHGADDYAMMYEALKRRYQGKENLPDLIVVDGGKGQLAVAFSLLKDLSISG
QDVIGLAKERVNGVTVQGGVNKSEDRVYLPHKKEALYLSRWPAVLFLLQRIRDEAHRFAV
SYHRSLKTRSDFMSLLDDIPGVGEVRKKALLLSFGDLARIREATVEELTQVEGIGKDLGE
KIHAFLHNDQRSVEPSTG
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgaaccggcaacaactggaaggtcgtatagacatagcgccacggacgcccggtgtttat
ctcatgaaggatgccgccggcaagatcctctatgtggggaaggcaaagaatctcaaaagc
cggactcgcgcttacttcagcgggacggattcccgcgccatgatcccctttcttgtttcc
cgaatccacgatatcgagtttatcctgacggagacggaaaaggaagccctgattcttgag
aacaatctgatcaaagaacaccatcctcgttacaatatctgttttcgggatgacaaggcc
tatttcaacatccgtgcggatctcaacgaacccttccccaggtttcaactggttcgacgc
ccccgcaaagacggggcaaaatacttcggaccctatccttccagtgcctcggcccgggaa
accctccagtttcttcaatccatctttccccttcgaacatgccgcgatgcggaattgaaa
tcacgcacgaggccctgtcttgaatatcagatcaagcggtgtcttgctccctgtgttggt
cgaataaactcagaagactatctgcaaatggtccgggatggagtttcctttcttgaagga
cggggaaataatctgctccgtgaactgcgggagcggatgaagatggcggctgaacagatg
aattatgaggaggcagcctttttgagagatcggatcagggcgatagaagaaacccttgaa
aggcagcgtatggtttcgatgacgttcaaagatcaggatatcttcggcttataccgggaa
ggacacctgattcaggtctgtattcttctgattcgtcagggaaaaattctgggaagccgg
ctccttccccttttgaaatttgaaggcgagacggcggacatgctgtcttcgctgctcatg
caatattatgatcaatctgtagacattcctcaggaaattcttattccggcatcgatcgag
gatcggcaggtcatacgggaatggctggaggaaaagcgtggaaaggggctttccattctg
attccccgaaaagggcgaggcctggaacttctccatattgcggaacagaatgcggaacat
ggcttcaaaatggagcgcaagtcgctcgatgattctgatgagtccctgcggctgctcatg
gaaagacttcatctcagacgcttccccaggaaaatagaggcgtttgacatctcgaacatc
ggtggacggctggctgtcgccgccatggtgacctttcaagatggcagacccttgaagtcc
ggttatcggcgttttcgaatccggacggtccatggagcagacgattatgccatgatgtat
gaggctttgaagaggaggtatcagggtaaggaaaacctgcctgacctcattgtcgtggat
ggaggaaaaggtcagctggctgtggcgttttccctgttgaaggatctgtcgatttcggga
caggatgtgatcggtctggccaaggaaagggtaaacggagttaccgtgcaggggggagtc
aacaaaagtgaagaccgcgtttacctcccccataaaaaggaagccctgtacctgagccgc
tggcctgcggtgcttttcctgcttcaacgcattcgggatgaggcgcaccgttttgccgtt
tcctatcatcgaagtctgaagacccgaagcgatttcatgtctcttctggacgacataccg
ggtgtgggagaagttcgtaaaaaggcccttctcctgagtttcggagatcttgcccggata
cgagaggcaactgtcgaggagttgactcaggtggagggaatcggaaaggatctgggagaa
aaaattcatgcgttccttcacaacgatcaacgatcggttgaaccatcaacaggatag
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