Syntrophus aciditrophicus: SYN_02979
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Entry
SYN_02979 CDS
T00346
Name
(GenBank) hydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sat
Syntrophus aciditrophicus
Pathway
sat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYN_02979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sat03019
]
SYN_02979
Messenger RNA biogenesis [BR:
sat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SYN_02979
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
Activator-TraM
KH_KhpA-B
KH-I_KHDC4-BBP
KH_NusA_2nd
KH_2
ATPase_gene1
PetM
Motif
Other DBs
NCBI-ProteinID:
ABC76610
UniProt:
Q2LRA0
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Position
733879..735444
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AA seq
521 aa
AA seq
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MLNYTVIAFIMLGLIAIGLAIGYFLKFRLSQKRLESSENLALRIIDEAKKEAETIKKEAV
LQTKENLLKLKAEFEKETRERKLDLDNLERRIRSKEENLDKRIDSMSQKENAIEVREKNL
LSKEMQLNEKHDKLSRMIGEQKEKLEQIADITSEEAKDFLIRSMEAAAKRDAAMLIRKIE
EDAKREADKKSREIIAYAVQRYAGDYVAENTVSVVNLPNDEMKGRIIGREGRNIRAIEAA
TGIDLIVDDTPEAVVLSSFDPIRREVAKISLERLITDGRIHPGRIEDIVKKVRLEVDSII
KETGERVSFDVGVHDIHPELINLLGSLKYRTSYSQNVLQHSIDVAHLTGMMAAELKMNIK
EAKRAGLLHDIGKAVDHKIEGTHAAIGADYAKRFGESQRIVQAIAAHHDDGRTNTLLGVL
VQAADTLSAARPGARREMLETYVKRLEELENIANSFNGVDKCFAIQAGREIRILVGSEKL
SDNDAMMLCKDIVKKIESELTYPGQIKVTVIRETRVSDFAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaattatactgtaatagcgtttatcatgttaggattaattgccattgggttggca
atcggttattttttgaaattcagactttctcagaaacgattggaatcttctgagaacctt
gcgttgaggattattgatgaagccaaaaaagaggctgaaaccataaaaaaagaggctgtg
cttcagacaaaagagaatctgctgaaactgaaggcggaattcgagaaggaaacgagagaa
agaaagctggatctggataatttagagcggagaattcgctcaaaggaagaaaatctcgat
aaacgaattgattcaatgtctcagaaagagaatgcaatcgaagttcgagaaaagaatttg
ctgtccaaagaaatgcagctcaatgagaagcacgataagttaagcagaatgattggggaa
cagaaagaaaaactggagcagattgccgacataacttcggaagaggcaaaagatttttta
atccggtctatggaagctgctgcgaagcgtgatgctgccatgctgattagaaaaatcgaa
gaagatgcaaagagggaggcagacaagaagtcgagagaaattattgcttatgctgtgcaa
cgttatgccggtgactatgttgcggaaaacactgtttctgtagtcaatcttccaaacgat
gaaatgaaggggcgtatcattgggcgggaaggtcgcaatatcagagcgatagaggcagcc
actggaattgatcttattgttgacgataccccggaagccgtagttttgtccagttttgat
cctatacggcgagaggtggcaaaaatttcactggaaagattgattacggatggaaggatt
catcctggcagaattgaagatattgtaaagaaggtgcggttggaagttgatagtattata
aaggaaacaggggaaagggtttcctttgacgtaggagtgcatgatattcatccagaactc
attaacctcctgggcagtttgaaatatcggacaagctattctcagaatgttctccagcat
tccattgatgtcgctcatctgacgggtatgatggcggcggaattgaagatgaatataaag
gaggcaaaacgtgcggggctgcttcacgatatcggtaaagcggttgatcataaaatagag
gggactcatgcggcaatcggggctgattacgcgaaacgttttggagaatcgcaaaggatt
gttcaggccatcgccgcccaccatgacgatggcagaacgaacacgcttcttggtgtcttg
gttcaggcagcagacaccttgtctgctgcaagaccaggagcccgaagggaaatgctggaa
acctatgtaaaacgattagaggaattggaaaatatagctaattcattcaacggcgtcgat
aagtgttttgccatccaggccggcagagaaatccggatccttgtcggaagtgaaaaactt
tcggacaacgatgcgatgatgctttgcaaggatatcgtcaaaaagatcgagtcggaattg
acatatccgggccagattaaggtaacagtgattagagaaacgcgagtatcggatttcgca
aaatag
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