Sylvia atricapilla (blackcap): 136366565
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Entry
136366565 CDS
T10263
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136366565 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sati03019
]
136366565 (CNOT1)
Messenger RNA biogenesis [BR:
sati03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136366565 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
136366565 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
136366565
NCBI-ProteinID:
XP_066183810
LinkDB
All DBs
Position
12:complement(7832109..7886872)
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIVQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVLKELNPNLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITMAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
LAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagtagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtca
ctgattacaaaaccaaactttatctcgacgctgtcctacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcacctcatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctggctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctttggtgtaggacag
gagcagatcgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtgcaagtgtcgaagaatgtcggaacataatcgtgcagttt
ggagttcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcaggactgacagacggcattccattacaatctatttcggctcctggcagtgggatt
tggagtgatggcaaagataagagcgatggaagccaagcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaaccctaacctggacttcaaagtagtaacatacgaa
ttggaccacccaggatttcagattcgtgatagcaagggcctgcatattgtagtttttggt
atccagaggggcttgggcatggaggtttttccagttaatgccatatacaggccttggaag
catgcagagggccagctctccttcatccaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgccatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgagtctctgttacgcttg
gcagaagtggggcagtatgaacaggtgaagcagctcttcagttttcctatcaagcattgc
ccagatatgctggtattggccttactgcagatcaacacgtcctggcataccctgcgccat
gaactcatctccacgctcatgccgattttccttggcaaccatcccaactcagccatcatt
ttgcactatgcatggcacggacagggtcagtctccttcaattcgtcagcttatcatgcat
gccatggcagaatggtacatgagaggggagcagtatgaccaggcaaaattgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggaacctttcatccaggcctgtatgactttctta
aagagaagatgtccatctatccttggtggccttgctccagagaaagatcagcccaaaagt
gctcagcttcctccagaaaccttggcaactatgttggcctgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagacgatcctcaccatggtagccaactgcagtaatgtc
atgaacaaggctcgacagcccccgcctggagtgatgcccaaaggacgccctcccagtgcc
agcagcttggatgccatctctcctgtgcagatcgactcgctcgcaggaatggcctctctt
agtttaggtggctcagctgctcctcacacccagagcatgcaaggcttccctccaaacttg
ggctctgctttcagtactcctcagtcaccagcaaaagcgttcccgcctctttccacccaa
aaccagacaacgggtttcagtggcattggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagcccttggccttcctgcggtgaac
aatgacccattcgtgcaaaggaagctgagcacgtctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaggaaatagatgatgaggcaaacagttacttccagcgtatttacaaccatccacca
cacccaaccatgtctgtggatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaatatcgt
ttctttccccagtacccagataaagagctgcacataacagcgtgtctcttcgggggcatc
atagagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttacaggagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagtg
accacctcaaccaccaccactgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaagatgtgccgccttccattaatactaccaacattgatacactgttagta
gcaacagatcaaacagagagaattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggtggaagaattgaaggaa
acagtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaaaagagtcagt
attgagcctaattttcacagcttatattcaaacttccttgacacacttaagaatccagaa
tttaataaaatggttctaaatgaaacctacagaaatatcaaggtgctattgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgataacaatggctaaaaataagcccatcttgcacacggatttggatgtgaagtcgcta
ctactggaagcatatgttaagggtcagcaggaattgctttatgtagtgccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcagacctccaaacccatggacaatg
gccattatgaatgttttagctgagctacatcaggaacatgatctaaagttgaatctgaag
tttgagatcgaggtgctctgcaagaatcttgcactagacatcaatgagctgaaacctgga
agtctcctgaaagataaggatcgtctgaagaatctggatgagcagctgtctgctccaaag
aaggatgtgaagcagccagaggagctaccacccatcacaacaactactgcttctacaact
ccagctaccagcaccacttgtacagccacggttcctccacagccccagtacagttaccat
gacatcaatgtgtattctttaggagggttggctccgcacattaccttaaatcctacgatt
ccgctgttccaagcccaccctcagctgaagcagtgtgtgcggcaggcaatcgagcgcgca
gtgcaggacctggtccatccggtggttgacagatccatcaagattgccatgacaacctgt
gagcagatagtcaggaaggactttgccctggattcggaggagtcacggatgcgtgtggcc
gctcaccacatgatgaggaacctgactgctgggatggccatgattacctgcagggaacct
ttgctgatgagcatagctaccaacttgaaaaacagctttgctactgcactgagggcagcc
tccccacagcagagggacatgatggagcaggcagctgcccagttagcacaggataactgt
gagcttgcctgctgctttatccagaagacagctgtggaaaaggcaggccctgagatggac
aagaggcttgcaactgaatttgagctcagaaagcatgccaggcaagaggggcgtcgctac
tgtgatcctgttgtgttaacataccaggctgagcggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaagcagctggctgtttatgaagagtttgcacgcaatgtccct
ggcttcttacctaccaatgacttaactcaacctacaggattcttggctcagcctatgaag
caagcttgggctacagatgatgtagcacagatttatgacaaatgtatgacagaactggag
cagcacctgcagtccattccacacaccctggccatgaatcctcaagttcaagcattgcgt
agcctcttggaggcggtggtagtggctcggaactcccgggatgctattgctgcacttgga
ctactgcagaaggctgtagagggcttgctggatgccaccagtggggctgacgctgacctc
ctgctccgctatcgtgagtgtcacctgctggtgctgaaggctctgcaggatggccgtgcc
tatggatctccatggtgtaacaaacaaataacgaggtgcctgatcgaatgcagagatgag
tacaagtacaacgtggaagctgtggagctgctaatccgcaatcaccttgttaacatgcag
cagtatgacctccacttggctcagtccatggagaatggcttgaactacatggctgtggca
tttgccatgcagttggtcaagatcttgttggtggatgagagaagtgttgcccatgtaaca
gaagcagatctgtttcacaccattgagacactcatgagaattaatgctcattccagagga
aacgccccagaaggattaccccagctgatggaagtggtccgatcaaactatgaagcaatg
attgaccgtgctcatggaggtcctaatttcatgatgcattcaggaatttcccaagcttct
gagtatgatgacccaccaggcctgagggagaaggcagaatacctgctgagagagtgggtg
aacctctaccattcagctgcagcaggccgtgacagtaccaaagcattctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcaggggatcctgaaaacagatgac
ctgatcacccgttttttccgtctttgcaccgaaatgtgtgttgagatcagctatcgagcc
ctggccgagcagcagcacaatcctgcagccaaccccactatgattcgagccaagtgctac
cacaacctggatgcctttgtgcgactcattgcactgctggtgaagcactctggggaggca
accaacacagtcacaaagatcaacctcctgaataaggttcttggtattgtggtgggagtt
cttctgcaagaccacgatgttcggcagagtgagtttcagcaacttccttaccatcgcatt
ttcatcatgttgctgttggaattaaatgctcctgagcatgtgctggagaccatcaatttc
cagacactcacagctttctgtaacacatttcacatcctgaggcctacaaaagctccaggt
tttgtttatgcctggctggaactgatctcccatcggatatttattgcaagaatgctggca
catacaccacagcagaagggttggcctatgtatgcccagttattgattgatctattcaag
tacttggctcctttccttagaaatgtggaactcaccaaacctatgcaaattctttacaag
ggcactctgcgtgtgttgctggttttgttgcatgatttcccagaatttctttgtgactac
cactatgggttctgtgatgtgatcccacctaactgtattcaactaaggaatctgatcctg
agtgccttcccacggaacatgaggcttccagaccctttcaccccaaacctaaaggtggac
atgttaagtgagattaacattgctccacgaatactcacaaatttcactggagtgatgcca
cctcagttcaaaaaagatttggattcctatctcaaaacccgttctccagtcacctttttg
tctgacttgcgaagcaacctacaggtatcaaatgaacctggcaaccgctacaacatccag
ctgattaatgcactggtgctctacgtaggtactcaagctattgcacacattcacaacaaa
ggcagcacaccctccatgagcaccattacccactcagctcacatggacatcttccagaat
ttggcagtagacctggatactgaaggccggtacctcttcctgaacgccatcgccaaccag
ctgcggtaccccaacagtcacacccactacttcagctgcaccatgctctacctgtttgca
gaggccaacacagaggccatccaggagcagatcaccagggttctcttggaacgactgatt
gtaaataggcctcatccctggggtctccttattacgtttattgagctgataaaaaatcca
gccttcaagttctggaaccatgagtttgttcactgtgctccagaaattgagaagttgttc
cagtcagttgcacagtgctgcatggggcagaagcaggcccagcaagtcatggaagggact
ggtgccagttag
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integrated database retrieval system
