KEGG   Sylvia atricapilla (blackcap): 136369901
Entry
136369901         CDS       T10263                                 
Symbol
WHRN
Name
(RefSeq) whirlin
  KO
K21879  whirlin
Organism
sati  Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:sati00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:sati03037]
    136369901 (WHRN)
Cilium and associated proteins [BR:sati03037]
 Primary cilia and associated proteins
  USH complex and associated proteins
   136369901 (WHRN)
SSDB
Motif
Pfam: PDZ PDZ_6 PDZ_2 HHD_RTEL1 DUF6288 CCM2_C USH1C_N PAH_ZNF598
Other DBs
NCBI-GeneID: 136369901
NCBI-ProteinID: XP_066189149
LinkDB
Position
19:2734234..2782229
AA seq 923 aa
MSAELDGVSVHSSSSSSGSLSSAPGPAPRPLSANVRRLHQALTALLSEAERERFILCLNA
YHGRRNVCDLVRSLRALLDGPRRRQLLPLLRLVLPRSDQLLFDQYTAEGPYLPPPGRPPP
PPAPPPVVPGELRQVTLRRSKAHEGLGFSIRGGAEHGVGIYVSLVEPGSLAEREGLRVGD
QILGVNGKSLDRVTHAEAVKVLKGCKKLNLSVHSVGRIPGGYVTNHIYTWVDPQGRSVSP
PTGLPHHQNSSLRRDSEKRSHLQLLQEGDEKKVNLVLNEGKSLGLMIRGGAEYSLGIYIT
GVDKGSEAESTGLKVGDQILEVNGRSFLSIPHDEAVKLLKSSRHLIMTVKDIGRLPHART
TVDETRWITSSQLGETLVSSAGAVGDHGMDVAARPVFYRGLAGSQVTLSTMVNQTRVMLE
EQARHLLNEQERATMGYYLDEYKEGNISVDALVMALFELLNTHAKFSLLSEVRGVISPQD
LDRFDNLVLKREIESMKARQPAAPSTDSYSMTSYSDTVSSSSSHFTATTVSSARERLLWL
IDLMENTSELEGAGDCHQSSINTLPDVSLDDLSSFPEEPPNFKPPPPPPPSAPQTLDPSS
AQPRLPGKDKPKRPSSESSQSGLFFVAPRNPSPPPKAPEKDAVSVTSTASTSTEDSAPSA
IYATISPSLPGARRPADAPLSLLGQPPIGPFPRVQSPTRPKSPSPPEGLRSAPPPPPPHP
APPPPEKGSPQTGANQHFILVEVHQPNSEPDVNEVRPLPQARASTLSQLSDSGQTLSEDS
GVDIGEVETSGKDKSRQPGAGKSRSLKEATRSEGAAEGASKPPGLLEPTSCLIRVSKSAP
TLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGKLKVGHVILEVNGTGLRGKEHREAARII
AEAFKLKEKDYIDFLVTEFNVAL
NT seq 2772 nt   +upstreamnt  +downstreamnt
atgagcgcggagctggacggcgtgtccgtgcactcctcctcctcctcgtcgggctcgctg
agctcggcgccggggccggctccgcggccgctctcggcgaacgtgcggcggctgcaccag
gcgctcacggcgctgctgagcgaggcggagcgggagcgcttcatcctctgcctgaacgcc
taccacggccgccgcaacgtctgcgacctggtgcgctccctgcgcgccctcctcgacggg
ccccgccgccggcagctgctgccgctgctgcgcctcgtcctgccgcgctccgaccagctc
ctcttcgatcagtacacggccgaggggccctatctgccgccgcccggccggcccccgccg
ccccccgccccgccgccggtggtcccgggcgagctgcggcaggtgacgctgcgccggagc
aaagcccacgagggtctgggcttcagcatccgcggcggagccgagcacggcgtgggcatc
tacgtgtcgctggtggaaccgggctccctggccgagcgggaggggctgcgcgtcggcgat
cagatcctgggggtcaacggcaagtccctggacagggtgacccacgccgaggcggtcaag
gtgctgaagggctgcaagaagctgaacctgtcggtgcactcggtggggcgcatcccgggg
ggttatgtcaccaaccacatctacacctgggtggacccccagggccgcagcgtgtccccc
cccacggggctgccccaccaccagaacagctccctgcgcagggacagcgagaagaggagc
cacctccagctcctgcaggagggggatgagaagaaggtgaatctggtcctgaatgaaggg
aaatccctgggcctcatgatccgaggaggggcagagtattccctgggcatctacatcacg
ggtgtggacaagggctccgaggctgagagcactggcctgaaggtgggagaccagatcctg
gaggtgaacggccggagcttcctgagcatcccccacgacgaggccgtgaagctgctcaag
tcctcgcgccacctcatcatgaccgtgaaggacatcgggcgcctgccccacgcccgcacc
acggtggacgagacccgctggatcaccagctcccagctcggggagaccctggtcagctca
gcaggggcagtgggggaccatggcatggacgtggcagccaggcccgtgttctaccggggg
ctggcgggctctcaggtgaccctgagcaccatggtgaaccagacccgagtcatgctggag
gagcaggcacggcacctgctcaacgaacaggagagagccaccatgggctactacctggat
gagtacaaggagggaaacatctctgtggatgccctggtcatggccctctttgagctgctc
aacactcacgccaagttctcgctgctctccgaggtgcggggggtcatctccccacaggac
ctcgaccgcttcgacaacctggtgctcaagagggagatcgagtccatgaaggcgcggcag
cccgcggcgcccagcaccgactcctactccatgacgtcctacagtgacaccgtctcgtcc
tccagcagccacttcactgccaccaccgtcagctcggcgcgggagcgactgctgtggctg
atagacctgatggagaacacgtcagaactggagggagctggggactgccaccagagcagc
atcaacaccctgccagatgtgtccctggatgacctctcctccttcccagaggaaccaccc
aacttcaagcctcctcctcctcctcctccttcagccccgcagaccctggacccttcctct
gcccagccccggctcccggggaaggacaagcccaaacgtccctcctctgagtcctcccag
tctggccttttcttcgtggccccccgaaacccgtctccccctcccaaggcccccgagaag
gacgcggtcagcgtcacctccacggcctccacgtccacggaggattccgcccccagcgcc
atctacgccaccatctcgccgtcgctgcccggcgcccgcaggccggcggacgccccgctc
tccctgctgggccagccgcccatcgggcccttccccagggtgcagtcccccaccaggccc
aagagcccctcgcccccggaggggctgcggagcgcccctccccctccgcccccgcacccc
gcgccccctcccccggaaaagggcagcccccaaaccggggccaaccaacatttcatcctg
gtcgaggtgcaccagcccaacagcgagcccgacgtcaacgaagtgaggcccctgccccag
gccagagcctccacgctctcccagctgtcggacagcgggcagaccctcagcgaggacagc
ggggtggacatcggggaggtggagacgagcggcaaggacaagagccggcagccaggcgcc
gggaaaagccgcagcctcaaggaggccacgaggagcgagggggcggcagaaggggcctcc
aagccgccagggctcctggagcccacgtcgtgtctgatccgggtgtccaagagcgctccc
accttgggcatcgccatcgagggcggcgccaacacgcggcagccgctgccccgcatcgtc
accatccagcgagggggctcggcacacaactgcgggaagctgaaggtgggacacgtcatt
ttggaggtgaacggcacggggctccggggaaaagagcaccgggaagccgcccgcatcatc
gccgaggcctttaagctgaaggaaaaggactacatcgatttcttggtcacagaattcaac
gtcgccctttag

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