Sylvia atricapilla (blackcap): 136369901
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Entry
136369901 CDS
T10263
Symbol
WHRN
Name
(RefSeq) whirlin
KO
K21879
whirlin
Organism
sati Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sati03037
]
136369901 (WHRN)
Cilium and associated proteins [BR:
sati03037
]
Primary cilia and associated proteins
USH complex and associated proteins
136369901 (WHRN)
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GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
HHD_RTEL1
DUF6288
CCM2_C
USH1C_N
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
136369901
NCBI-ProteinID:
XP_066189149
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All DBs
Position
19:2734234..2782229
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AA seq
923 aa
AA seq
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MSAELDGVSVHSSSSSSGSLSSAPGPAPRPLSANVRRLHQALTALLSEAERERFILCLNA
YHGRRNVCDLVRSLRALLDGPRRRQLLPLLRLVLPRSDQLLFDQYTAEGPYLPPPGRPPP
PPAPPPVVPGELRQVTLRRSKAHEGLGFSIRGGAEHGVGIYVSLVEPGSLAEREGLRVGD
QILGVNGKSLDRVTHAEAVKVLKGCKKLNLSVHSVGRIPGGYVTNHIYTWVDPQGRSVSP
PTGLPHHQNSSLRRDSEKRSHLQLLQEGDEKKVNLVLNEGKSLGLMIRGGAEYSLGIYIT
GVDKGSEAESTGLKVGDQILEVNGRSFLSIPHDEAVKLLKSSRHLIMTVKDIGRLPHART
TVDETRWITSSQLGETLVSSAGAVGDHGMDVAARPVFYRGLAGSQVTLSTMVNQTRVMLE
EQARHLLNEQERATMGYYLDEYKEGNISVDALVMALFELLNTHAKFSLLSEVRGVISPQD
LDRFDNLVLKREIESMKARQPAAPSTDSYSMTSYSDTVSSSSSHFTATTVSSARERLLWL
IDLMENTSELEGAGDCHQSSINTLPDVSLDDLSSFPEEPPNFKPPPPPPPSAPQTLDPSS
AQPRLPGKDKPKRPSSESSQSGLFFVAPRNPSPPPKAPEKDAVSVTSTASTSTEDSAPSA
IYATISPSLPGARRPADAPLSLLGQPPIGPFPRVQSPTRPKSPSPPEGLRSAPPPPPPHP
APPPPEKGSPQTGANQHFILVEVHQPNSEPDVNEVRPLPQARASTLSQLSDSGQTLSEDS
GVDIGEVETSGKDKSRQPGAGKSRSLKEATRSEGAAEGASKPPGLLEPTSCLIRVSKSAP
TLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGKLKVGHVILEVNGTGLRGKEHREAARII
AEAFKLKEKDYIDFLVTEFNVAL
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcggagctggacggcgtgtccgtgcactcctcctcctcctcgtcgggctcgctg
agctcggcgccggggccggctccgcggccgctctcggcgaacgtgcggcggctgcaccag
gcgctcacggcgctgctgagcgaggcggagcgggagcgcttcatcctctgcctgaacgcc
taccacggccgccgcaacgtctgcgacctggtgcgctccctgcgcgccctcctcgacggg
ccccgccgccggcagctgctgccgctgctgcgcctcgtcctgccgcgctccgaccagctc
ctcttcgatcagtacacggccgaggggccctatctgccgccgcccggccggcccccgccg
ccccccgccccgccgccggtggtcccgggcgagctgcggcaggtgacgctgcgccggagc
aaagcccacgagggtctgggcttcagcatccgcggcggagccgagcacggcgtgggcatc
tacgtgtcgctggtggaaccgggctccctggccgagcgggaggggctgcgcgtcggcgat
cagatcctgggggtcaacggcaagtccctggacagggtgacccacgccgaggcggtcaag
gtgctgaagggctgcaagaagctgaacctgtcggtgcactcggtggggcgcatcccgggg
ggttatgtcaccaaccacatctacacctgggtggacccccagggccgcagcgtgtccccc
cccacggggctgccccaccaccagaacagctccctgcgcagggacagcgagaagaggagc
cacctccagctcctgcaggagggggatgagaagaaggtgaatctggtcctgaatgaaggg
aaatccctgggcctcatgatccgaggaggggcagagtattccctgggcatctacatcacg
ggtgtggacaagggctccgaggctgagagcactggcctgaaggtgggagaccagatcctg
gaggtgaacggccggagcttcctgagcatcccccacgacgaggccgtgaagctgctcaag
tcctcgcgccacctcatcatgaccgtgaaggacatcgggcgcctgccccacgcccgcacc
acggtggacgagacccgctggatcaccagctcccagctcggggagaccctggtcagctca
gcaggggcagtgggggaccatggcatggacgtggcagccaggcccgtgttctaccggggg
ctggcgggctctcaggtgaccctgagcaccatggtgaaccagacccgagtcatgctggag
gagcaggcacggcacctgctcaacgaacaggagagagccaccatgggctactacctggat
gagtacaaggagggaaacatctctgtggatgccctggtcatggccctctttgagctgctc
aacactcacgccaagttctcgctgctctccgaggtgcggggggtcatctccccacaggac
ctcgaccgcttcgacaacctggtgctcaagagggagatcgagtccatgaaggcgcggcag
cccgcggcgcccagcaccgactcctactccatgacgtcctacagtgacaccgtctcgtcc
tccagcagccacttcactgccaccaccgtcagctcggcgcgggagcgactgctgtggctg
atagacctgatggagaacacgtcagaactggagggagctggggactgccaccagagcagc
atcaacaccctgccagatgtgtccctggatgacctctcctccttcccagaggaaccaccc
aacttcaagcctcctcctcctcctcctccttcagccccgcagaccctggacccttcctct
gcccagccccggctcccggggaaggacaagcccaaacgtccctcctctgagtcctcccag
tctggccttttcttcgtggccccccgaaacccgtctccccctcccaaggcccccgagaag
gacgcggtcagcgtcacctccacggcctccacgtccacggaggattccgcccccagcgcc
atctacgccaccatctcgccgtcgctgcccggcgcccgcaggccggcggacgccccgctc
tccctgctgggccagccgcccatcgggcccttccccagggtgcagtcccccaccaggccc
aagagcccctcgcccccggaggggctgcggagcgcccctccccctccgcccccgcacccc
gcgccccctcccccggaaaagggcagcccccaaaccggggccaaccaacatttcatcctg
gtcgaggtgcaccagcccaacagcgagcccgacgtcaacgaagtgaggcccctgccccag
gccagagcctccacgctctcccagctgtcggacagcgggcagaccctcagcgaggacagc
ggggtggacatcggggaggtggagacgagcggcaaggacaagagccggcagccaggcgcc
gggaaaagccgcagcctcaaggaggccacgaggagcgagggggcggcagaaggggcctcc
aagccgccagggctcctggagcccacgtcgtgtctgatccgggtgtccaagagcgctccc
accttgggcatcgccatcgagggcggcgccaacacgcggcagccgctgccccgcatcgtc
accatccagcgagggggctcggcacacaactgcgggaagctgaaggtgggacacgtcatt
ttggaggtgaacggcacggggctccggggaaaagagcaccgggaagccgcccgcatcatc
gccgaggcctttaagctgaaggaaaaggactacatcgatttcttggtcacagaattcaac
gtcgccctttag
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