KEGG   Staphylococcus aureus CA-347 (MRSA): CA347_504
Entry
CA347_504         CDS       T02702                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
sauc  Staphylococcus aureus CA-347 (MRSA)
Pathway
sauc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sauc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CA347_504 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sauc03400]
    CA347_504 (mfd)
Enzymes [BR:sauc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CA347_504 (mfd)
DNA repair and recombination proteins [BR:sauc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      CA347_504 (mfd)
SSDB
Motif
Pfam: UvrB_inter DEAD TRCF CarD_TRCF_RID Helicase_C ResIII MFD_D3 RecG_dom3_C Glyco_hydro_115 UB2H AAA_22 IstB_IS21 DUF3105
Other DBs
NCBI-ProteinID: AGO28876
LinkDB
Position
541727..545233
AA seq 1168 aa
MTILTTLIKEDNHFQDLNQVFGQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQ
ADKLETDLLQFIDAEELYKYPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPL
NGLKKWLTPVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIID
IFPLIGEPIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVISHLKEEL
KSAYENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMYETPSTIIDYFQKD
AIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQSFIKYDDFETLIEGYPVTYFS
LFATTMPIKLNHIIKFSCKPVQQFYGQYDIMRSEFQRYVNQNYHIVVLVETETKVERMQA
MLSEMHIPSITKLHRSMSSGQAVIIEGSLSEGFELPDMGLVVITERELFKSKQKKQRKRT
KAISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTDQLFVP
VDQMDQVQKYVASEDKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ
YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAA
FKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTG
FVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRT
LHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSI
YEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANT
LIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSG
FKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVD
LNLDAYLPTEYIANEQAKIEIYKKLRKTETFDQIIDIKDELIDRFNDYPVEVARLLDIVE
IKVHALHSGITLIKDKGKIIDIHLSVKATENIDGEVLFKATQPLGRTMKVGVQNNAMTIT
LTKQNQWLDSLKFLVKCIEESMRISDEA
NT seq 3507 nt   +upstreamnt  +downstreamnt
atgacaatattgacaacgcttataaaagaagataatcattttcaagaccttaatcaggta
tttggacaagcaaacacactagtaactggtctttccccgtcagctaaagtgacgatgatt
gctgaaaaatatgcacaaagtaatcaacagttattattaattaccaataatttataccaa
gcagataaattagaaacagatttacttcaatttatagatgctgaagaattgtataagtat
cctgtgcaagatattatgaccgaagagttttcaacacaaagccctcaactgatgagtgaa
cgtattagaactttaactgcgttagctcaaggtaagaaagggttatttatcgttccttta
aatggtttgaaaaagtggttaactcctgttgaaatgtggcaaaatcaccaaatgacattg
cgtgttggtgaggatatcgatgtggaccaatttcttaacaaattagttaatatggggtac
aagcgggaatccgtggtatcgcatattggtgaattctcattgcgaggaggtattatcgat
atctttccgctaattggggaaccaatcagaattgagctatttgataccgaaattgattct
attcgggattttgatgttgaaacgcagcgttccaaagataatattgaagaagttgatata
acaactgcaagtgattatatcattactgaagaagtgatcagccatcttaaagaagagtta
aaaagtgcatatgaaaatacaagacccaaaatagataaatcagtgcgcaatgatctgaaa
gaaacgtatgaaagttttaaattattcgaaagtacatactttgatcatcaaatactacgt
cgtttagtagcgtttatgtatgaaacaccttcgacaattattgattatttccaaaaagat
gcaatcattgcagttgatgaatttaatcgtattaaagaaactgaagaaagtttaacagta
gagtctgattcgtttattagcaatattattgaaagtggtaatggatttataggacaaagt
tttataaaatatgatgattttgaaacattgattgaaggctatcctgtcacttatttttca
ttattcgctacaacaatgccgataaaactaaatcatattattaaattttcatgtaaacct
gtccaacaattttatgggcaatatgacattatgcgttctgaatttcaacgatatgttaac
caaaattatcatatcgtggttttggtcgaaaccgaaactaaagttgaacgtatgcaagcg
atgttaagtgaaatgcatattccatcaataacaaaattgcatcgctcaatgtcatcgggg
caagcagtgattattgaaggcagtttatctgaaggatttgaactacctgatatgggatta
gttgtcattactgagcgtgagctttttaaatcaaaacagaaaaagcaacgaaaacgtacg
aaagctatctcaaatgctgaaaaaattaagtcttaccaagatttaaatgtgggagattat
attgttcatgtgcatcatggtgttggtagatatttaggtgttgagacgctcgaagtaggg
caaacacatcgtgattatattaaattgcaatataaaggtacggatcaactatttgttcca
gtagatcaaatggatcaagttcaaaaatatgtagcttcggaagataagacgccaaaatta
aataaactcggtggcagtgaatggaaaaaaacaaaagctaaagttcaacaaagtgttgaa
gatattgctgaagagttgattgatttatataaagaaagagaaatggcagaaggttatcaa
tatggggaagacacagctgagcaaacaacatttgaattagattttccatatgaacttacg
cctgaccaagcgaaatctatcgatgaaattaaagatgacatgcaaaaatcgcgtccaatg
gaccgcttgctatgtggtgatgttggttatggtaaaactgaagttgcagtgagagcagca
ttcaaagctgtaatggaaggaaagcaggttgcatttttagttcctacaactattttagct
cagcaacattatgagacgttaattgagcgtatgcaagattttcctgttgaaattcaatta
atgagtcgttttagaacgcctaaagagataaagcaaactaaggagggacttaaaacgggg
tttgttgacatagttgttggtacacacaaattacttagtaaagatatacagtataaagat
ttaggactattgattgtagatgaagaacaacgatttggtgtacgccataaagagcgtatt
aaaacattaaaacataatgtagatgtactaacattgaccgcaaccccaatacctagaaca
ttgcatatgagtatgctaggtgtgcgcgatttgtcagtcattgaaacgccaccagaaaat
cgtttcccagttcaaacatatgtattagaacagaacatgagttttatcaaagaagcttta
gaaagagaactatcccgtgatggccaagtattttatctttataataaagtgcaatccatt
tatgaaaaacgagaacaactccagatgttaatgccagatgctaacattgcagttgctcat
ggacaaatgacagagcgcgatttagaagaaacgatgttaagttttatcaataatgaatat
gatattttggtaacgacgacgattattgaaacaggtgtcgatgtcccaaatgcaaatact
ttgatcattgaagatgcagatcgctttggattgagtcagttgtatcaattaagaggtcgt
gttggtcgttcaagtcgtattggttatgcatacttcttacatccagcaaataaggtacta
actgagactgcagaagatcgattacaagcgattaaagaatttacggagttaggctcagga
tttaagattgcgatgcgtgatttgaatattcgtggtgctggtaatttgttaggtaaacaa
cagcacggctttattgatacagttggatttgatttgtacagtcaaatgttagaagaagct
gtaaatgaaaaacgtggtattaaggaaccagaatctgaggtgccagaagtcgaagttgat
ttaaacttggatgcatatttgccaacagaatatattgcaaatgaacaagctaaaattgaa
atttataaaaagctacgaaaaactgaaacatttgatcaaattatcgacattaaagacgaa
ttaattgatcgtttcaatgattatcctgttgaagtagcacgtttgcttgatatagtggaa
ataaaagtacacgcattacattcaggtatcacgttgattaaagataaagggaaaataatt
gatattcatttatctgtaaaagccactgaaaatattgatggcgaagtgctgttcaaagca
acacaacctttaggtagaacaatgaaggttggtgttcaaaataatgcaatgacaattact
ttaacgaaacaaaatcaatggcttgatagtttgaagttcttagttaagtgcattgaagaa
agtatgagaatcagtgatgaagcataa

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