Streptomyces malaysiensis subsp. malaysiensis CGMCC0516: BV401_15395
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Entry
BV401_15395 CDS
T04980
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sauo
Streptomyces malaysiensis subsp. malaysiensis CGMCC0516
Pathway
sauo00040
Pentose and glucuronate interconversions
sauo01100
Metabolic pathways
sauo02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sauo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
BV401_15395
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BV401_15395
Enzymes [BR:
sauo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
BV401_15395
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-ProteinID:
AQA16231
UniProt:
A0ABM6HPV6
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Position
complement(3864549..3865580)
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AA seq
343 aa
AA seq
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MSVAARRRRRLTAVAAGVTAALALGGLSTVSAHGTDPADSARSNSTRATATRLAAETTPI
GFGAGTTGGGNATATTVTSLDAFKTAVTGDKAKVVRVSGLISLTGQVDIGSNTTVLGVGS
GSGFTGGGLRLKESTNVIVRNLDISKPRKPSDGITVQKSTKVWIDHNTFSADREHDKDYY
DGLLDINHGSDNITVSWNKFADHFKGSLVGHSDNNASEDTGHLKVTYHHNWFTNVYSRIP
SLRFGTGHFYDNYVQGAETGVHSRMGAQTLVENNVFRDTEVAVTTSRDSDVDGYAVLRGN
DLGGAATEISRTGSFTTPPYAYTAEPASSVVATVTAQSGAGRL
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atatccgtcgccgcccgccgccgacgccggctgaccgcggtcgccgcgggcgtcaccgcg
gcgctcgcgctcggcggcctctccacagtctccgcccatggcacggacccggccgactcc
gcacgctccaacagcacacgcgccaccgccacccgcctcgccgccgagaccacccccatc
ggcttcggcgccggcaccacgggcggcgggaacgccaccgccaccaccgtgacctccctg
gacgccttcaagaccgccgtcacgggcgacaaggccaaggtggtcagggtctccgggctg
atctccctcaccggacaggtggacatcggctccaacaccaccgtgctgggcgtgggttcc
ggctccggcttcaccggcggcggactgcggctgaaggagtcgacgaacgtcatcgtccgc
aacctcgacatcagcaagccccggaagccgtccgacggcatcaccgtgcagaagtcgaca
aaggtgtggatcgaccacaacaccttctcggccgaccgcgagcacgacaaggactactac
gacggtctgctggacatcaaccacggctcggacaacatcacagtctcctggaacaagttc
gccgaccacttcaagggcagcctggtcggtcacagcgacaacaacgcgagcgaggacacc
ggtcacctcaaggtgacgtaccaccacaactggttcaccaatgtgtactcccgcatcccc
agcctgcgcttcggcaccggacacttctacgacaactacgtccagggcgcggaaaccgga
gtgcactcccggatgggcgcgcagacgctggtcgagaacaacgtcttccgcgacaccgag
gtggccgtcaccaccagccgggacagcgatgtcgacggctatgcggtgctgcgcggcaac
gacctgggcggggcggccaccgagatctcccggacgggcagcttcaccaccccgccgtac
gcgtacacggcggaaccggcgtcctcggtcgtggcgaccgtcaccgcccagtcgggcgcg
ggcaggctctga
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