Sulfobacillus acidophilus TPY: TPY_1568
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Entry
TPY_1568 CDS
T01576
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
say
Sulfobacillus acidophilus TPY
Pathway
say03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
say00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TPY_1568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
say03400
]
TPY_1568
Enzymes [BR:
say01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TPY_1568
DNA repair and recombination proteins [BR:
say03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TPY_1568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Flavi_NS4B
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEJ39750
LinkDB
All DBs
Position
complement(1477176..1477883)
Genome browser
AA seq
235 aa
AA seq
DB search
MRRWPHGILGPTFYQKHQPEGGPIRVHTVHELLRWVGQGVIEWHAPLGSTYRQHEWAVLD
LDPEPQASWHDVVAVATMVTTLLREVGWSYVMKTSGQDGLHIFCPIEPAEPPVVTAVMKY
FAELMAAAAPDLVTVERLKSKRQGRVYVDYLQNGAHRTMVMAYSVRATPDARISWPLMPD
QLSLGPARWTVGWVLDQPPTSWPPFDGSVLPPAALQDTVRRFGIRAETSTAAWKW
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
gtgcggcgatggcctcatgggattttagggccgacgttttaccaaaaacatcaacccgag
ggaggtcccattcgggtgcacacggtgcacgaactcttgcgctgggtagggcaaggggtg
attgaatggcatgcgccattggggtcgacctatcggcaacatgagtgggcggtgctggat
ctcgatccggaaccgcaggcgagttggcacgatgtcgtcgcggtggcgacgatggtcacc
acccttttgcgggaagtgggttggtcttatgtcatgaaaacgtcaggccaagacggattg
cacattttttgtcccattgaacccgcggaaccccctgtggtcacggcggtcatgaaatac
ttcgccgagctcatggctgccgcggcccccgatttggtcacggtggaacgcctgaaatcc
aaacggcagggcagggtctatgtcgattatctacaaaacggtgctcaccggaccatggtc
atggcctattccgtccgcgccaccccggacgcccggatttcgtggccgttgatgcccgat
caattgagtctgggaccggcccgctggacggtcggttgggtcctcgaccagccgcccaca
tcatggccgccgtttgacgggagcgtccttccgccggccgctcttcaagacaccgtcaga
cggttcggtatccgggcggagacgtctacagcagcttggaagtggtga
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