Shewanella amazonensis: Sama_0512
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Entry
Sama_0512 CDS
T00445
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
saz
Shewanella amazonensis
Pathway
saz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sama_0512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saz03019
]
Sama_0512
03009 Ribosome biogenesis [BR:
saz03009
]
Sama_0512
Enzymes [BR:
saz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sama_0512
Messenger RNA biogenesis [BR:
saz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sama_0512
Ribosome biogenesis [BR:
saz03009
]
Prokaryotic type
rRNA helicases
Sama_0512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
HEM4
HD_4
Motif
Other DBs
NCBI-ProteinID:
ABL98722
UniProt:
A1S2W6
LinkDB
All DBs
Position
complement(628459..630372)
Genome browser
AA seq
637 aa
AA seq
DB search
MSSNEKTFRELGLTESVLRALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAF
ALPLLCSVDANLNAPQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQ
ALRRGPQVVVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPES
RQLALFSATMPEQIKRVANKHLRNPVNISIAASHTTVESIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILI
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI
ERATNSRISPMKIPSPESVAERRLSRLGEQVADILANEHLDFMKGAVAQLCQQLEVDTEQ
LAAALLHQVQLERPLQLPAMHERQRDNFDERTGRGQNDRAERGDRNERRRDSRPLPGNFG
SADTLKDNPDISMKRYLIDVGRDHNVGVGNIVGAIANEANIDSRYIGQIQLYDAVTTVDL
PDGMPKEVLQHLKKVRVCGKPLNIREVSTDGSDEIPVSNGPIPKRTRKPSGDRPERGERK
FNDRGGDRGDRGGDRKFSERKSFDKKPAGKPRRPKED
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaatgaaaagactttccgcgaactcggtctgactgagtctgttttgcgtgcc
ctcgacgagctgggttatgaaacccctacgcccatccaggccgccagtatccaacctctg
atgtccggccaggacatcctgggtcaggcacaaacaggtacgggtaaaaccggtgccttt
gcactgccactgctttgcagcgtcgatgccaacctcaatgcaccacaaattctggtgctg
gcccctacccgcgaactcgcggtacaggtcgccgaagccttcaccagctatgccaaacac
atgaagggtttccacgtactgcctatctacggtggccagagcatgtatcagcagctccag
gccctgcgccgtggtccacaggtagttgtgggcacaccaggccgtgttatggaccacatg
cgtcgtggcaccctgaagctcgacaccttgaaggctctggtactcgacgaagccgatgaa
atgctgaaaatgggcttcatcgacgatatcgagtggatcctcgagcacactccagagagc
cgccagctggccctgttctcggccaccatgcctgagcagatcaagcgcgttgccaacaag
cacctgcgcaatccagtgaacatcagcatcgccgccagccacaccacagtggaatccatc
gagcaacgttttgtgcaggtgtcccagcacaataaactcgaggcactggtacgggtactg
gaagtggaaaacactgaaggtatcatcatcttcgtgcgtacccgtaactcctgtatggaa
ctggccgaaaagctggaagcccgtggctatgccgcatcgccactgcacggcgatatgaac
cagcaggcccgtgagcgcgccgttgatcaactgaaatccggcaagctggatattctgatc
gccaccgatgtggccgcccgtggtctggacgttgagcgtatcggccacgtagtaaactac
gatattccttacgatacagaagcttacgtgcaccgtatcggccgtaccggccgcgcgggt
cgtaccggtatggcaattctgtttgtgaccagccgtgaaatgcgcatgcttcgcaccatc
gagcgcgccaccaacagccgtatctctccaatgaagatcccaagcccagagtctgtggcc
gagcgtcgtctgtctcgcttgggtgagcaggttgccgacatcctcgccaacgagcatctg
gactttatgaaaggcgccgtggctcagctgtgtcagcagctggaagtggataccgagcaa
ctggccgcggccctgttgcatcaggtgcagttggagcgtccattgcagctgcctgccatg
cacgagcgtcagcgtgacaacttcgacgagcgcaccggccgtggccagaacgatcgcgcc
gaacgtggtgaccgtaacgagcgtcgccgtgactcacgtcctctgccaggcaatttcggc
agtgccgataccctcaaggacaacccggacatcagcatgaagcgttatctcatcgatgtg
ggtcgtgaccataacgtgggtgtgggtaacatcgtgggcgccatcgccaacgaagccaac
atcgacagccgctacatcggccagatccagctgtacgatgcagtaaccactgttgacctg
ccagacggcatgccaaaagaagtactgcagcacctgaaaaaagtgcgcgtatgtggcaag
ccactgaacatccgtgaagtaagcaccgatggcagcgatgaaatcccggtaagcaacggg
ccaatccccaagcgcacacgtaagccatccggcgatcgtcctgagcgcggagagcgtaag
ttcaacgatcgtggcggtgaccgtggtgaccgcggtggcgaccgcaaatttagcgagcgc
aagagcttcgacaagaagccagctggcaagccacgccgtccaaaggaagactga
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